Factsheet for HORVU6Hr1G085430.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G341400.1	Wheat	mitochondrion	93.19	94.81
TraesCS6A01G358600.1	Wheat	mitochondrion	92.06	94.2
TraesCS6B01G391300.1	Wheat	mitochondrion	91.68	93.99
Os02t0796400-00	Rice	mitochondrion	72.97	74.66
EES07683	Sorghum	mitochondrion	71.83	72.11
Zm00001d052030_P001	Maize	plastid	70.13	70.67
Zm00001d011182_P001	Maize	endoplasmic reticulum	49.34	53.05
GSMUA_Achr7P12830_001	Banana	mitochondrion	51.61	50.18
VIT_18s0001g07000.t01	Wine grape	mitochondrion	47.45	50.0
KRH52991	Soybean	mitochondrion	43.86	46.77
Bra036629.1-P	Field mustard	mitochondrion	41.02	45.49
CDX99984	Canola	mitochondrion	41.02	45.4
CDY25035	Canola	mitochondrion, plastid	41.97	45.31
CDY19721	Canola	mitochondrion	40.83	45.28
Bra020588.1-P	Field mustard	mitochondrion	41.21	44.4
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	41.02	44.2
PGSC0003DMT400004477	Potato	plastid	39.32	43.24
CDY05574	Canola	mitochondrion	41.78	42.18
Solyc01g081320.2.1	Tomato	plastid	41.21	42.08
KRH62276	Soybean	mitochondrion	44.42	40.87
HORVU5Hr1G027150.1	Barley	mitochondrion	31.0	31.91
HORVU2Hr1G093220.7	Barley	mitochondrion	25.71	25.95
HORVU3Hr1G070650.1	Barley	cytosol	6.99	25.52
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	24.76	25.24
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	26.09	25.05
HORVU1Hr1G085940.2	Barley	cytosol	7.56	23.53
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	21.74	22.95
HORVU2Hr1G079080.2	Barley	cytosol	11.72	22.55
HORVU6Hr1G016360.7	Barley	mitochondrion	21.17	22.4
HORVU6Hr1G016390.10	Barley	plastid	22.5	21.4
HORVU3Hr1G040710.1	Barley	mitochondrion	23.06	19.93
HORVU7Hr1G066420.6	Barley	plastid	18.53	18.63

Protein Annotations

EnsemblPlants:HORVU6Hr1G085430.2	EnsemblPlantsGene:HORVU6Hr1G085430	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
UniParc:UPI000B47BCF5	UniProt:A0A287V172	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:558877235..558881655

Molecular Weight (calculated)

59661.3 Da

IEP (calculated)

9.430

GRAVY (calculated)

-0.240

Length

529 amino acids

Sequence
(BLAST)

001: KAVHERYRAR PMAMAAAVAR RLLRLLSSRP NPKPASLSSC SSPSPSFDTP ATAGEREGDP LSWRLLRLRS PGAAAAAIDR WAQERGRVSR PDLQRAVSQL
101: RRARRYGHAL EILSWMDSRK EIKLLPLDHA ARLDLIAKVH GTSQAEEYYN KLPNSASREA ASFPMLHCYV AERNVQKAES FMASLQSIGL PVDPHSFNEM
201: MKLYVATCEY EKVFSVIDLM KRNNIPRNAL SYNLWMNACS VSDVTSVQSV FKEMVNDGTI EVGWSTYCTL ANIFMKHGLN SKALACLRTA ETKLSTAQRL
301: GYSFVMTCYA ALGDSDGVMR LWEASKCVPG RIPSANYMSA ILCLIKVGDI DRAEWIFGSW EVECRKHDVR VSNVLLGAYV RNGWIEKAEK LHLHMLEKGG
401: RPNYKTWEIL MEGFVQTRQM DKAVNAMKKA LSLMKGCHWR PPLKLVEAIA TFFEEQGNTD DANRYIKVLQ KFNLTSLPLY KSVLRAYIKA DTILPTNISE
501: MIARDDIVMD EEMDHLIIRA SKIDITGNV

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.