CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05574	Canola	mitochondrion	89.39	83.59
CDY19721	Canola	mitochondrion	78.16	80.29
CDX99984	Canola	mitochondrion	77.76	79.71
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	75.31	75.15
VIT_18s0001g07000.t01	Wine grape	mitochondrion	54.9	53.59
KRH52991	Soybean	mitochondrion	52.45	51.81
PGSC0003DMT400004477	Potato	plastid	46.12	46.99
Solyc01g081320.2.1	Tomato	plastid	46.33	43.82
TraesCS6B01G391300.1	Wheat	mitochondrion	46.12	43.8
KRH62276	Soybean	mitochondrion	51.02	43.48
TraesCS6A01G358600.1	Wheat	mitochondrion	44.69	42.36
TraesCS6D01G341400.1	Wheat	mitochondrion	44.9	42.31
GSMUA_Achr7P12830_001	Banana	mitochondrion	46.73	42.1
HORVU6Hr1G085430.2	Barley	mitochondrion	45.31	41.97
Os02t0796400-00	Rice	mitochondrion	43.67	41.39
EES07683	Sorghum	mitochondrion	44.08	40.99
Zm00001d052030_P001	Maize	plastid	42.86	40.0
Zm00001d011182_P001	Maize	endoplasmic reticulum	30.41	30.28
CDY35213	Canola	cytosol	2.45	29.27
CDX98698	Canola	mitochondrion	27.96	28.07
CDX97288	Canola	mitochondrion	28.98	27.63
CDX91277	Canola	mitochondrion	28.98	27.36
CDY15126	Canola	cytosol, mitochondrion, plastid	28.37	27.15
CDX90079	Canola	mitochondrion	28.16	26.95
CDY50358	Canola	cytosol	12.86	26.81
CDX96239	Canola	mitochondrion	26.73	26.68
CDY46999	Canola	mitochondrion	26.53	26.48
CDY03299	Canola	mitochondrion	25.51	26.43
CDX89976	Canola	mitochondrion	27.76	26.41
CDY39781	Canola	mitochondrion	25.51	26.15
CDY15237	Canola	mitochondrion	27.35	26.12
CDY24553	Canola	mitochondrion	15.31	26.04
CDX91822	Canola	mitochondrion	26.53	26.0
CDX90962	Canola	mitochondrion	26.33	25.75
CDY34141	Canola	mitochondrion	25.71	25.61
CDY65573	Canola	mitochondrion	18.98	25.14
CDY44801	Canola	mitochondrion	20.41	24.75
CDY35212	Canola	mitochondrion	13.47	23.49
CDY50357	Canola	mitochondrion	9.39	23.0
CDY71968	Canola	plastid	13.06	21.92
CDY27645	Canola	mitochondrion	11.43	21.62
CDY24554	Canola	cytosol	6.73	21.57
CDY05786	Canola	plastid	20.0	20.21
CDY31943	Canola	plastid	19.8	20.0
CDY06272	Canola	mitochondrion	20.82	19.25
CDY09903	Canola	mitochondrion	20.82	19.25
CDX94049	Canola	cytosol	27.55	19.23
CDY00734	Canola	mitochondrion	6.94	19.21
CDY57695	Canola	mitochondrion	23.47	19.07
CDY39654	Canola	mitochondrion	23.06	18.8
CDY36566	Canola	mitochondrion	22.86	18.64
CDY27647	Canola	mitochondrion	14.69	17.69
CDX97686	Canola	plastid	22.24	17.58
CDY30088	Canola	plastid	21.84	17.34
CDY48421	Canola	mitochondrion	14.29	16.95
CDY53325	Canola	mitochondrion	20.0	14.04
CDY53324	Canola	mitochondrion, plastid	20.41	13.68
CDX73880	Canola	mitochondrion	13.67	13.37
CDY66759	Canola	cytosol	18.57	12.18
CDX79395	Canola	cytosol	23.27	11.12
CDY36565	Canola	cytosol	1.22	1.79

Protein Annotations

EnsemblPlants:CDY25035	EnsemblPlantsGene:GSBRNA2T00028863001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF578	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY25035	ProteinID:CDY25035.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EDCBE4	UniProt:A0A078GEZ1	MapMan:35.1	:

Description

BnaC02g39730DBnaC02g39730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEZ1]

Coordinates

chrLK032167:+:408014..409639

Molecular Weight (calculated)

55752.9 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.207

Length

490 amino acids

Sequence
(BLAST)

001: MYSRIRLAAN KTFSTISVSR RVSSRASTDT SSLSHHNSLE EILRKNGPRL SVPSLLQQRV DSGHAVTLPE LRSITNRLIK SNRHDLALQM MEWMETQKEV
101: HFSADDTCLR LELIIKSHGL HKAEEYFEKL SVKLAKASYL PLLRGYVKSK LVQEGESLME KLNGLGFLVT PHPFNEMMKL YEATRQYEKV VLVISLMKGN
201: KIPRNVLSYN LWMNACCEVN GVAGVESVYM EMVDDTSVEV GWSSLCTLAN VYIKGGFVEK ASLVLESAEK KLNRSNRLGY FFLIKLYASL GNKEGVVKLW
301: EASKSVSGRA TCANYICVLT SLVKLGDIAE AESVFSEWEG TCCNYDVRVS NVLLGAYMRG GDIRRAEALH HRVLERGGAP NYKTWEILME GFVKCQSMEK
401: AIDAMHRAFE VMKHCHWRPS QKIVMAIAEY FEKEAKMDEA NGYVRDLHRL GLASLPLYRL LLRMHEHVQR PASDIYEMMK LDKIIMDRES

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.