CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032863.1-P	Field mustard	mitochondrion	94.84	96.5
CDY48421	Canola	mitochondrion	89.43	88.14
CDY27645	Canola	mitochondrion	51.84	81.47
AT1G28000.1	Thale cress	mitochondrion	57.74	60.57
CDY35212	Canola	mitochondrion	28.01	40.57
CDY65573	Canola	mitochondrion	31.45	34.59
CDY00734	Canola	mitochondrion	14.25	32.77
CDY71968	Canola	plastid	23.1	32.19
CDY50357	Canola	mitochondrion	12.29	25.0
CDY39781	Canola	mitochondrion	28.5	24.27
CDY03299	Canola	mitochondrion	28.01	24.1
CDY24553	Canola	mitochondrion	16.95	23.96
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	24.57	20.28
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	24.08	19.68
CDX73880	Canola	mitochondrion	24.08	19.56
CDY44801	Canola	mitochondrion	19.41	19.55
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	23.83	19.44
CDY05786	Canola	plastid	22.6	18.97
CDY31943	Canola	plastid	22.6	18.97
KRH22399	Soybean	cytosol	20.88	17.86
CDY53325	Canola	mitochondrion	30.47	17.77
CDX90079	Canola	mitochondrion	21.87	17.38
KRH26940	Soybean	cytosol	21.13	17.34
CDY53324	Canola	mitochondrion, plastid	30.96	17.24
CDY15126	Canola	cytosol, mitochondrion, plastid	21.62	17.19
CDX98698	Canola	mitochondrion	20.15	16.8
GSMUA_Achr5P20750_001	Banana	mitochondrion	22.36	16.67
CDX97288	Canola	mitochondrion	20.64	16.34
CDX91277	Canola	mitochondrion	20.39	15.99
CDY19721	Canola	mitochondrion	18.67	15.93
TraesCS1B01G188200.1	Wheat	mitochondrion	19.16	15.85
Os10t0501300-01	Rice	mitochondrion	19.9	15.79
TraesCS1D01G166700.1	Wheat	mitochondrion	18.92	15.56
CDX99984	Canola	mitochondrion	18.18	15.48
CDX96239	Canola	mitochondrion	18.67	15.48
Os10t0501000-01	Rice	cytosol	16.95	15.3
OQU91552	Sorghum	mitochondrion	19.16	15.29
Zm00001d032543_P001	Maize	mitochondrion	19.41	15.28
Solyc07g054100.1.1	Tomato	cytosol	12.04	15.17
CDY46999	Canola	mitochondrion	18.18	15.07
CDY34141	Canola	mitochondrion	17.94	14.84
CDY25035	Canola	mitochondrion, plastid	17.69	14.69
PGSC0003DMT400047256	Potato	extracellular	11.55	14.55
TraesCS1A01G168700.1	Wheat	mitochondrion	20.15	14.04
CDY05574	Canola	mitochondrion	17.69	13.74
CDY15237	Canola	mitochondrion	16.95	13.45
CDX89976	Canola	mitochondrion	16.95	13.4
CDY66759	Canola	cytosol	24.32	13.25
Os10t0501200-00	Rice	mitochondrion	20.15	13.1
CDX91822	Canola	mitochondrion	15.97	13.0
CDX90962	Canola	mitochondrion	15.97	12.97
CDY36566	Canola	mitochondrion	18.18	12.31
CDY39654	Canola	mitochondrion	18.18	12.31
CDY35213	Canola	cytosol	1.23	12.2
CDX94049	Canola	cytosol	20.39	11.82
CDY57695	Canola	mitochondrion	17.2	11.61
CDY09903	Canola	mitochondrion	14.74	11.32
CDY06272	Canola	mitochondrion	14.5	11.13
CDX97686	Canola	plastid	16.95	11.13
CDY30088	Canola	plastid	16.22	10.7
CDX79395	Canola	cytosol	17.2	6.83
CDY50358	Canola	cytosol	2.46	4.26
CDY24554	Canola	cytosol	0.98	2.61
CDY36565	Canola	cytosol	0.74	0.9

Protein Annotations

EnsemblPlants:CDY27647	EnsemblPlantsGene:GSBRNA2T00038406001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
PFAM:PF01535	ProteinID:CDY27647	ProteinID:CDY27647.1	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EE5E17
UniProt:A0A078GR69	MapMan:35.1	:	:	:	:

Description

BnaA09g27600DBnaA09g27600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GR69]

Coordinates

chrLK032207:-:526724..529082

Molecular Weight (calculated)

45258.5 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.619

Length

407 amino acids

Sequence
(BLAST)

001: MMQNLGQYSK RFLSFRKTQA IIQFTRTLTS AKLNDTLHSR VMAVENRFPF LWRVKVTPVL NEWLKQGNEI NPTDLRAVIK ALCESQRFDH ALQVSEWITK
101: RGVFEISTED VASRLYLIEI HSGLSEAENF FKSIPENMKD DLVYTTLLSF YTKDKETRHE AEATYQKMRE NNMLFKPNPY YKMISLYGLL GETNKVDEIL
201: RQMIENGVQH DITLTSNNVL KAYASVPDVE AMEKFLKRIE YEMPPFALAW QTGISMARAY LKCGSNRKAI EMLRRTEQVV DAKSKDVANK VLMEMYGEAG
301: AKRDEARLYI SQNAKQRQRK GACRCKGSGG RSSHHPGYYY GGCGGGCGSI RGGGDGSRAD DNGGGDDSRA DDDGGGDGTR ADDNGGGVGA DNDGDGGGGC
401: GGCGSWD

Best Arabidopsis Sequence Match ( AT1G28000.1 )
(BLAST)

001: MKCLGRYAIK NLLSRRLPSI RFAGTLTSPK LNETSHSRIM ALGREQKKVT PPLDEWLKRG KDLNPAVLRG LINSLCESQR FNHALQVSEW ITKRGIFDLS
101: TEDFASRLCL VEISTGLKEA EKFFKSIPEN MRDDSVHTTL LSLYTISKKT RHEAEATYQT MRVQNMLLKP YPYYSMIYLY ALLGEKNMID EILRQMKENG
201: VEHDKNLTAN NVLKAYASLP DVEAMEMFLM GLEVEEPRFS LAWQTGISIA KAYLKGGSSR KAVEMLRRTE LVVDTKSKDS ANKVLMMMYW DAGAKQDASR
301: LSRLIYPKSK KGKRMKAYDE KIESYGGDSS DPIIFIDNRR DCGSVGDGDG DVDVDVDVDV DDGFSGSSDG GASCGGGGCG GGGCGGGD

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.