CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36566	Canola	mitochondrion	95.67	95.67
AT1G15480.1	Thale cress	mitochondrion	75.71	76.6
CDY57695	Canola	mitochondrion	64.39	64.18
Bra026128.1-P	Field mustard	cytosol	94.34	60.9
KRH66764	Soybean	cytosol	38.1	55.18
VIT_08s0007g05090.t01	Wine grape	mitochondrion	56.91	54.81
KRH69049	Soybean	mitochondrion	51.75	51.07
GSMUA_Achr5P27560_001	Banana	cytosol	42.93	50.29
Solyc12g020050.1.1	Tomato	plastid	51.75	49.84
PGSC0003DMT400022632	Potato	mitochondrion	51.75	49.84
GSMUA_Achr8P21680_001	Banana	mitochondrion	51.25	49.84
KRH31614	Soybean	mitochondrion	49.75	49.83
KRG95098	Soybean	mitochondrion	48.59	47.87
PGSC0003DMT400021596	Potato	mitochondrion	47.09	46.17
TraesCS3D01G195000.1	Wheat	mitochondrion	45.59	44.7
TraesCS3B01G220600.2	Wheat	mitochondrion	45.59	44.7
HORVU3Hr1G040710.1	Barley	mitochondrion	45.26	44.44
Os01t0280400-00	Rice	mitochondrion	44.76	44.03
TraesCS3A01G191200.1	Wheat	mitochondrion	44.76	43.95
OQU86720	Sorghum	mitochondrion	44.76	43.88
Os12t0170100-01	Rice	mitochondrion	44.59	43.86
Zm00001d008224_P002	Maize	mitochondrion	44.93	43.41
Zm00001d040475_P001	Maize	mitochondrion	44.26	43.39
GSMUA_Achr11P...	Banana	mitochondrion	44.09	42.2
CDX97686	Canola	plastid	41.1	39.84
CDY30088	Canola	plastid	40.43	39.38
CDX79395	Canola	cytosol	63.73	37.37
CDY24553	Canola	mitochondrion	15.47	32.29
CDY50357	Canola	mitochondrion	9.82	29.5
CDY00734	Canola	mitochondrion	8.32	28.25
CDX96239	Canola	mitochondrion	22.3	27.29
CDY46999	Canola	mitochondrion	22.3	27.29
CDY34141	Canola	mitochondrion	22.3	27.24
CDY35212	Canola	mitochondrion	12.65	27.05
CDY65573	Canola	mitochondrion	15.97	25.95
CDY39781	Canola	mitochondrion	19.8	24.9
CDY03299	Canola	mitochondrion	19.47	24.74
CDX91277	Canola	mitochondrion	20.63	23.89
CDX99984	Canola	mitochondrion	18.8	23.64
CDX97288	Canola	mitochondrion	20.13	23.54
CDX98698	Canola	mitochondrion	18.8	23.16
CDY25035	Canola	mitochondrion, plastid	18.8	23.06
CDY24554	Canola	cytosol	5.82	22.88
CDY19721	Canola	mitochondrion	18.14	22.85
CDX91822	Canola	mitochondrion	18.97	22.8
CDY27645	Canola	mitochondrion	9.65	22.39
CDX90962	Canola	mitochondrion	18.64	22.36
CDY05574	Canola	mitochondrion	19.47	22.33
CDY06272	Canola	mitochondrion	19.13	21.7
CDY44801	Canola	mitochondrion	14.48	21.53
CDY09903	Canola	mitochondrion	18.8	21.32
CDY50358	Canola	cytosol	8.15	20.85
CDY15126	Canola	cytosol, mitochondrion, plastid	17.64	20.7
CDX90079	Canola	mitochondrion	17.64	20.7
CDX89976	Canola	mitochondrion	17.64	20.58
CDY15237	Canola	mitochondrion	17.47	20.47
CDY71968	Canola	plastid	9.65	19.86
CDY05786	Canola	plastid	15.31	18.97
CDY31943	Canola	plastid	15.14	18.76
CDY27647	Canola	mitochondrion	12.31	18.18
CDY48421	Canola	mitochondrion	11.81	17.19
CDX94049	Canola	cytosol	18.14	15.53
CDY53325	Canola	mitochondrion	16.31	14.04
CDY53324	Canola	mitochondrion, plastid	15.47	12.72
CDY35213	Canola	cytosol	0.83	12.2
CDX73880	Canola	mitochondrion	9.82	11.78
CDY66759	Canola	cytosol	14.31	11.51
CDY36565	Canola	cytosol	2.33	4.18

Protein Annotations

EnsemblPlants:CDY39654	EnsemblPlantsGene:GSBRNA2T00068225001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY39654	ProteinID:CDY39654.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEBF5B	UniProt:A0A078HQP7	MapMan:16.12.5.4.19	:	:

Description

BnaC05g11830DBnaC05g11830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQP7]

Coordinates

chrLK032453:+:258359..260442

Molecular Weight (calculated)

67732.1 Da

IEP (calculated)

7.250

GRAVY (calculated)

-0.398

Length

601 amino acids

Sequence
(BLAST)

001: MFALSKVVRR SQSLRLGVCN AVYYSKLEVS LVERNGSVES NALIHDKHEA FSSSYELPWN STTGRRSFSS DAGARSSGEE DEIESLGTPI DASSDSEDGL
101: QSEEELSCDE ADIEGAELEL LSEAGKTPGS KRSSELFKAI VSVSGLSVAS ALDKWVEDGK EINRTEIANA MLQLRRRRMY GRALQLAEWL EEHKQYELEE
201: RDYASRLDLI AKVRGLYKGE LYLERIPESF RGELVYRTLL ANYASTSNVR KAEAVFNKMK DLGFPRTSYA CDQMLMLYKR VDKKKIADML SMMEKENLKP
301: TLYTYKILID AKGASNDISG MEEIVETMKS EGVEVDLRAK SIVARHYASA GLKEKAEKVL KEMEGESLVA NRYVCKDLLS IYGSLQRADE VSRIWKICEA
401: NNPFYKESLA AILAFGKINK VKEAEAVFEK SVKMGHRVSS GMYSVLLRVY VDHKMVSEGK DLVKRMVDSG CNIGALTWDA LIRLYVEAGE VEKADASLSK
501: ATQLKQIKPL MSSFMYVMDE YARKGDVHNT EKIFHWMRQS GYHSRFRQFQ SLIRAYVNAK APAYGMKDRM KADNVFPNRG LAVLLANADP FKKTPLSDLL
601: D

Best Arabidopsis Sequence Match ( AT1G15480.1 )
(BLAST)

001: MFALSKVLRR SQSLRLGACN AVYSKLDIPL GERNIAIESN ALIHDKHEAL PRFYELSWSS STGRRSLSSD AGAKTTGDDD DLEDKNVDLA TPDETSSDSE
101: DGEEFSGDEG DIEGAELELH VPESKRPSEM FKAIVSVSGL SVGSALDKWV EQGKDTNRKE FESAMLQLRK RRMFGRALQM TEWLDENKQF EMEERDYACR
201: LDLISKVRGW YKGEAYIKTI PESFRGELVY RTLLANHVAT SNVRTAEAVF NKMKDLGFPL STFTCNQMLI LYKRVDKKKI ADVLLLLEKE NLKPNLNTYK
301: ILIDTKGSSN DITGMEQIVE TMKSEGVELD LRARALIARH YASAGLKEKA EKVLKEMEGE SLEENRHMCK DLLSVYGYLQ REDEVRRVWK ICEENPRYNE
401: VLAAILAFGK IDKVKDAEAV FEKVLKMSHR VSSNVYSVLL RVYVDHKMVS EGKDLVKQMS DSGCNIGALT WDAVIKLYVE AGEVEKAESS LSKAIQSKQI
501: KPLMSSFMYL MHEYVRRGDV HNTEKIFQRM KQAGYQSRFW AYQTLIQAYV NAKAPAYGMK ERMKADNIFP NKRLAAQLAK ADPFKKTPLS DLLD

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g15480, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XI21]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.