CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040475_P001	Maize	mitochondrion	86.46	86.46
Zm00001d008224_P002	Maize	mitochondrion	83.69	82.48
Os01t0280400-00	Rice	mitochondrion	69.98	70.21
Os12t0170100-01	Rice	mitochondrion	69.82	70.05
TraesCS3D01G195000.1	Wheat	mitochondrion	68.68	68.68
TraesCS3B01G220600.2	Wheat	mitochondrion	68.35	68.35
HORVU3Hr1G040710.1	Barley	mitochondrion	67.86	67.97
TraesCS3A01G191200.1	Wheat	mitochondrion	67.54	67.65
GSMUA_Achr5P27560_001	Banana	cytosol	46.0	54.97
GSMUA_Achr8P21680_001	Banana	mitochondrion	54.49	54.05
KRH66764	Soybean	cytosol	35.89	53.01
VIT_08s0007g05090.t01	Wine grape	mitochondrion	50.24	49.36
GSMUA_Achr11P...	Banana	mitochondrion	48.78	47.61
KRG95098	Soybean	mitochondrion	46.82	47.05
CDY57695	Canola	mitochondrion	45.51	46.27
KRH69049	Soybean	mitochondrion	45.84	46.14
AT1G80270.2	Thale cress	mitochondrion	44.37	45.64
Solyc12g020050.1.1	Tomato	plastid	46.17	45.35
PGSC0003DMT400022632	Potato	mitochondrion	45.84	45.03
KRH31614	Soybean	mitochondrion	43.88	44.83
CDY39654	Canola	mitochondrion	43.88	44.76
AT1G15480.1	Thale cress	mitochondrion	43.07	44.44
PGSC0003DMT400021596	Potato	mitochondrion	40.29	40.29
AT3G15590.2	Thale cress	cytosol, mitochondrion	39.48	39.67
Bra003559.1-P	Field mustard	cytosol	45.19	38.9
Bra027226.1-P	Field mustard	plastid	36.22	36.88
CDX97686	Canola	plastid	36.05	35.65
CDY30088	Canola	plastid	35.07	34.85
OQU88705	Sorghum	plastid	34.58	33.28
Bra026128.1-P	Field mustard	cytosol	43.39	28.57
CDX79395	Canola	cytosol	45.19	27.02
OQU91552	Sorghum	mitochondrion	19.25	23.14
EER90329	Sorghum	mitochondrion	18.92	23.06
EER91421	Sorghum	mitochondrion	18.43	22.78
EER90330	Sorghum	mitochondrion	18.43	22.51
EES02848	Sorghum	mitochondrion	19.25	22.26
EES12592	Sorghum	plastid	18.11	21.55
EES10908	Sorghum	mitochondrion	14.52	21.45
OQU79216	Sorghum	cytosol	19.09	21.31
EES07683	Sorghum	mitochondrion	17.94	20.87
EER87766	Sorghum	cytosol	17.29	19.78
OQU79953	Sorghum	cytosol	19.09	18.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.5.4.19	UniProt:A0A1B6Q2Y5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	ProteinID:KXG32283.1	EnsemblPlants:OQU86720	ProteinID:OQU86720	ProteinID:OQU86720.1
PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3003G134000	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0003C733D5	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:12619595..12624122

Molecular Weight (calculated)

69649.3 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.475

Length

613 amino acids

Sequence
(BLAST)

001: MWALRRAGTP LRFHAQKAVS ARGCASLEVL LTADAKNVEE HHDADCQKAC CCHKPKPPAF QLSFSSGQFA WSRGFSSQPG ENSGDKDDEL EDGFSDLEVP
101: PEAGKTDAGL TSEDSSDEDA ADEFGLDDVD ADAKPEKEYI KRTSGSILLK TVLEAPRHQL TSVLEKWRKD GNALDRSELY FVLIQLRKRK WYNKALELVE
201: WVQKLQLFEL EERDFAARVD LTAKVYGLHK AEQYIEKIPA SHRGEVVYRT LLANCVATDN VKKSEEVFNR MKDLGFPPTT FSFNQLLLLY KRLDKKKIAD
301: VLTMMEKEDV KPSLFTYKLL VDAKGLVGDI EAMEKVVESM EKDGIEPDLM FNATIARHYI FNGQREKAET LLESMEGDDI QKNRFACKIL LPLHAFLGNS
401: DDVERIWKVC EDNTRLDECK SAIEAFGKLG NVEKAEKVFE DMLVKWKTLS PKFYNTLLKV YADQNLLDKG KELAKRMDEN HVRFGTQTLD ALVKLYVDAG
501: EVEKAESLLH KLSLKNYIKP NYSSYMKLLD SYSKKGDIHN AEKVFNKLRQ IGYTGRIRMY QLLLHSYLHA KAPAYGFKER MKADNIFPNG AVATLIAATD
601: PFVKKKSISD LLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.