Factsheet for Zm00001d040475_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86720	Sorghum	mitochondrion	86.46	86.46
Zm00001d008224_P002	Maize	mitochondrion	81.4	80.23
Os12t0170100-01	Rice	mitochondrion	69.33	69.56
Os01t0280400-00	Rice	mitochondrion	69.17	69.39
TraesCS3D01G195000.1	Wheat	mitochondrion	67.21	67.21
TraesCS3B01G220600.2	Wheat	mitochondrion	66.88	66.88
HORVU3Hr1G040710.1	Barley	mitochondrion	66.72	66.83
TraesCS3A01G191200.1	Wheat	mitochondrion	65.91	66.01
GSMUA_Achr8P21680_001	Banana	mitochondrion	53.83	53.4
GSMUA_Achr5P27560_001	Banana	cytosol	44.54	53.22
KRH66764	Soybean	cytosol	35.56	52.53
VIT_08s0007g05090.t01	Wine grape	mitochondrion	48.45	47.6
GSMUA_Achr11P...	Banana	mitochondrion	47.63	46.5
KRG95098	Soybean	mitochondrion	46.17	46.39
Solyc12g020050.1.1	Tomato	plastid	46.82	45.99
KRH69049	Soybean	mitochondrion	45.51	45.81
PGSC0003DMT400022632	Potato	mitochondrion	46.33	45.51
KRH31614	Soybean	mitochondrion	44.37	45.33
CDY57695	Canola	mitochondrion	44.21	44.94
AT1G80270.2	Thale cress	mitochondrion	43.23	44.46
CDY39654	Canola	mitochondrion	43.39	44.26
AT1G15480.1	Thale cress	mitochondrion	41.92	43.27
PGSC0003DMT400021596	Potato	mitochondrion	39.8	39.8
AT3G15590.2	Thale cress	cytosol, mitochondrion	39.48	39.67
Bra003559.1-P	Field mustard	cytosol	43.88	37.78
Bra027226.1-P	Field mustard	plastid	35.89	36.54
CDX97686	Canola	plastid	35.4	35.0
CDY30088	Canola	plastid	34.42	34.2
Bra026128.1-P	Field mustard	cytosol	42.9	28.25
CDX79395	Canola	cytosol	43.88	26.24
Zm00001d009122_P001	Maize	mitochondrion	19.9	23.69
Zm00001d023915_P001	Maize	mitochondrion	18.76	22.95
Zm00001d013923_P001	Maize	mitochondrion	18.6	22.8
Zm00001d024521_P001	Maize	mitochondrion	18.43	21.98
Zm00001d032543_P001	Maize	mitochondrion	18.11	21.47
Zm00001d052030_P001	Maize	plastid	18.27	21.33
Zm00001d002789_P001	Maize	plastid	17.62	21.05
Zm00001d003500_P001	Maize	mitochondrion	14.19	20.57
Zm00001d019185_P001	Maize	cytosol	34.09	20.15
Zm00001d045492_P004	Maize	cytosol	18.27	18.79
Zm00001d011182_P001	Maize	endoplasmic reticulum	13.38	16.67

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103650031	MapMan:16.12.5.4.19	UniProt:A0A1D6MR04	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM31431.1	PFAM:PF01535	PFAM:PF13812
PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000220FDCD	EnsemblPlantsGene:Zm00001d040475	EnsemblPlants:Zm00001d040475_P001
EnsemblPlants:Zm00001d040475_T001	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr3:+:45714344..45718276

Molecular Weight (calculated)

69043.4 Da

IEP (calculated)

6.841

GRAVY (calculated)

-0.442

Length

613 amino acids

Sequence
(BLAST)

001: MWALRRAGNP LRFHAQKVVS PRGCASLEVL LTADAKNVEE HHEADCQKVC YCHKPKPPSF LLSFSSGQFA WSRGFSSQPG ANSSDKDDEL EDVFSDLNVP
101: PEAGKKDAGL TSEDTSDEDA TDEIGLPSMD ADAKPETEHI KRTFGSTLLK TVLEAPRHQV TSALEKWAKD GNALDRGELY YVLLNLRKRK WYHKALELVE
201: YVQNSQLLEL GERDYAARVD LTAKVYGLHK AEQYIEKIPA SHRSEVVYRT LLANCVAEGN VKKSEQVFNR MKDLGFPVTT FSSNQLLLLY KRLDKKKIAD
301: VLTMMEKEDV KPSIFTYKVL VDAKGMVGDV EAMEKVVESM VKDGIEPDLT FNATIARQYI FNGQRDKAET LLESMEGDDI QKNRAACKFL LPLYAFLGNG
401: DAVERIWKVC EDNTRIDECL SAIDAFGKLG NVEKAEKVFE DMFVKWKNLS SKYYTALLKV YANQNLLDKG EELAKRMDEE GAKFGTPTLN ALVKLYADAG
501: EVEKAESLLH KLSLKNNVKP SYSSYMTLLD SYSKKGDVHN SEKVFNKLRQ IGYTGRIRMY QFLLHSYLHA KAPAYGFKER MKADNIFPNS AVATLIAATD
601: PFVKKKSVSD LLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.