Factsheet for Zm00001d045492_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87766	Sorghum	cytosol	82.89	92.16
Os04t0320200-01	Rice	mitochondrion	74.5	84.73
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	75.5	81.67
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	73.49	81.56
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	73.32	81.38
TraesCS4A01G428500.1	Wheat	mitochondrion	73.32	81.08
GSMUA_Achr1P16170_001	Banana	cytosol	58.05	71.05
CDY24553	Canola	mitochondrion	31.04	64.24
VIT_00s0394g00020.t01	Wine grape	cytosol	50.0	60.94
CDY50357	Canola	mitochondrion	20.3	60.5
CDX96239	Canola	mitochondrion	49.83	60.49
CDY46999	Canola	mitochondrion	49.5	60.08
AT1G60770.1	Thale cress	cytosol	49.33	59.88
KRH45616	Soybean	nucleus	49.16	59.8
Bra027131.1-P	Field mustard	mitochondrion	48.99	59.47
CDY34141	Canola	mitochondrion	48.99	59.35
Bra031484.1-P	Field mustard	mitochondrion	48.83	59.15
Solyc11g006380.1.1	Tomato	cytosol	47.65	57.72
PGSC0003DMT400002590	Potato	cytosol	47.48	57.52
KRG99413	Soybean	cytosol, mitochondrion	31.71	53.85
CDY50358	Canola	cytosol	20.81	52.77
CDY24554	Canola	cytosol	13.09	50.98
Zm00001d009122_P001	Maize	mitochondrion	27.85	32.23
Zm00001d002789_P001	Maize	plastid	24.66	28.66
Zm00001d013923_P001	Maize	mitochondrion	23.66	28.2
Zm00001d023915_P001	Maize	mitochondrion	22.65	26.95
Zm00001d032543_P001	Maize	mitochondrion	22.99	26.5
Zm00001d052030_P001	Maize	plastid	21.81	24.76
Zm00001d003500_P001	Maize	mitochondrion	16.61	23.4
Zm00001d024521_P001	Maize	mitochondrion	18.46	21.4
Zm00001d011182_P001	Maize	endoplasmic reticulum	16.78	20.33
Zm00001d008224_P002	Maize	mitochondrion	19.8	18.97
Zm00001d040475_P001	Maize	mitochondrion	18.79	18.27
Zm00001d019185_P001	Maize	cytosol	18.96	10.9

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:AQL02396.1	ProteinID:AQL02397.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7VSV1	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000221C12E	EnsemblPlantsGene:Zm00001d045492	EnsemblPlants:Zm00001d045492_P004	EnsemblPlants:Zm00001d045492_T004	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr9:-:24420821..24426027

Molecular Weight (calculated)

67198.9 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.590

Length

596 amino acids

Sequence
(BLAST)

001: MGRNRRLVIS EPTAHQGPEK PNAITRVGLG SSEARASPRA AAKTLKTRDA GGEEERAEAE MATRMKDVAR RSTKKYVEEA LYRRLFRKGS TPQAVREEVD
101: GFLDSRKRAF KWEVGVCVRR MRRNALYRPS LKLSEVMARR GMNPTVSDQA IRLDLIAKSR GIAAAEKYFL DLPETSKTHL TYGALLNSYC KELMTEKAES
201: LMEKMKELNF AFTAMSFNSL MTMYTKVNQA EKVPSIIQDM KADDVLPDVF TYNVWMRALA ALKDIPGVER VIEEMKRDGR VAPDWTTYSN LASIYVEAGM
301: FEKAEAALKE LEKRNTSNDI EAYQFLITLY GRTQNLVEVH RVWRSLKRDN PRMANMSYLN MIQVLANLKD LSAAEACFKE WEARHIHPPK TNTKGSGADN
401: TPGADPKSPS NPPNNQSGTK ETGDETAEDL QPKHPKYDIR VANAMIKAYI TEGMLDKAVA MKKRAKMRGG RLNAKTWEIF MEHYLKTGDL KMAHWCADRA
501: MKKGHSSGRI WVPPPAVTET LMSYFEENKD VDGAERYVGA LKKVQKDLGA PVFEPLVRTY AAAGKKFPGM RQRLKIENVE VGEGTAQLLD SICADQ

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.