Factsheet for Bra027131.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50357	Canola	mitochondrion	40.33	99.0
CDY50358	Canola	cytosol	46.23	96.6
Bra031484.1-P	Field mustard	mitochondrion	90.63	90.45
AT1G60770.1	Thale cress	cytosol	86.15	86.15
VIT_00s0394g00020.t01	Wine grape	cytosol	67.01	67.28
KRH45616	Soybean	nucleus	63.14	63.27
PGSC0003DMT400002590	Potato	cytosol	63.34	63.21
Solyc11g006380.1.1	Tomato	cytosol	62.73	62.6
GSMUA_Achr1P16170_001	Banana	cytosol	60.69	61.19
KRG99413	Soybean	cytosol, mitochondrion	41.14	57.55
Os04t0320200-01	Rice	mitochondrion	59.88	56.11
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.88	54.75
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.67	54.56
TraesCS4A01G428500.1	Wheat	mitochondrion	59.88	54.55
EER87766	Sorghum	cytosol	59.47	54.48
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	59.67	53.18
Zm00001d045492_P004	Maize	cytosol	59.47	48.99
Bra033321.1-P	Field mustard	mitochondrion	36.25	34.56
Bra000902.1-P	Field mustard	mitochondrion	35.23	34.53
Bra038762.1-P	Field mustard	mitochondrion	29.74	29.92
Bra018528.1-P	Field mustard	mitochondrion	29.12	27.82
Bra036629.1-P	Field mustard	mitochondrion	26.48	27.25
Bra020588.1-P	Field mustard	mitochondrion	27.09	27.09
Bra033215.1-P	Field mustard	mitochondrion	28.11	26.95
Bra028632.1-P	Field mustard	mitochondrion	21.79	26.49
Bra036673.1-P	Field mustard	mitochondrion	24.44	25.1
Bra011054.1-P	Field mustard	mitochondrion	17.31	24.93
Bra031586.1-P	Field mustard	mitochondrion	23.42	21.66
Bra032863.1-P	Field mustard	mitochondrion	15.48	19.0
Bra027226.1-P	Field mustard	plastid	23.22	18.94
Bra032862.1-P	Field mustard	mitochondrion	14.46	18.73
Bra036496.1-P	Field mustard	plastid	17.92	18.14
Bra003559.1-P	Field mustard	cytosol	24.03	16.57
Bra032865.1-P	Field mustard	cytosol	17.72	15.16
Bra001400.1-P	Field mustard	mitochondrion, plastid	22.61	14.82
Bra026128.1-P	Field mustard	cytosol	26.88	14.18
Bra032866.1-P	Field mustard	mitochondrion	14.66	11.29

Protein Annotations

EnsemblPlants:Bra027131.1	EnsemblPlants:Bra027131.1-P	EnsemblPlantsGene:Bra027131	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
UniParc:UPI00025426C5	UniProt:M4EEB9	MapMan:35.1	:	:	:

Description

AT1G60770 (E=7e-251) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:8701267..8703072

Molecular Weight (calculated)

55734.3 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.440

Length

491 amino acids

Sequence
(BLAST)

001: MALRHLSRPR DIVKRSTKKY LDEPLYHRLF KDGGSEVSVR QQLNHFLKGT KHVFKWEVGD TIKKLRSRGL YYPALKLSEV MEHRGMNKTV SDQAIHLDLV
101: AKARGIAAGE SYFVDLPETS KTELTYASLL NCYCKELMTE KAEGLLSKMK ELNITVSSMS YNSLMTLYTK TGQAERVPGM IQEMKAEDVM PDSYTYNVWM
201: RALAATEDVS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSEKAEK ALQELEMKNT ERDFKAYQFL ITLYGRLGKL TEVYRIWRSL RLAMPKTSNV
301: AYLNMIQVLV NLKDVPGAET LFKEWQANCS TYDIRVVNVM IGAYAREGLI EKANELKEKS PRRGGKLNAK TWELFMDYFV KRGETAQALE CITKAVSIGK
401: GDGGKWLPSE DTVRAVMSQF EEKKDVNGAE SLLEILKKGT DDVGAETFAS LIRTYAAAGK SHPAMRQRLK MEKVKVDKAT EKLLDELCQD E

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.