Factsheet for Bra036673.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39781	Canola	mitochondrion	98.54	98.54
AT2G20710.1	Thale cress	mitochondrion	82.01	80.0
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	41.0	39.28
Bra011054.1-P	Field mustard	mitochondrion	27.62	38.71
PGSC0003DMT400047256	Potato	extracellular	24.9	36.84
Solyc07g054100.1.1	Tomato	cytosol	24.69	36.53
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	37.66	36.14
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	37.03	35.9
KRH22399	Soybean	cytosol	35.56	35.71
KRH26940	Soybean	cytosol	35.77	34.48
Bra036496.1-P	Field mustard	plastid	32.43	31.96
Os10t0501300-01	Rice	mitochondrion	33.89	31.58
TraesCS1B01G188200.1	Wheat	mitochondrion	32.43	31.5
GSMUA_Achr5P20750_001	Banana	mitochondrion	35.15	30.77
TraesCS1D01G166700.1	Wheat	mitochondrion	31.8	30.71
OQU91552	Sorghum	mitochondrion	32.01	30.0
Bra032862.1-P	Field mustard	mitochondrion	23.43	29.55
Os10t0501000-01	Rice	cytosol	27.2	28.82
Bra018528.1-P	Field mustard	mitochondrion	30.96	28.79
Bra032863.1-P	Field mustard	mitochondrion	24.06	28.75
Bra038762.1-P	Field mustard	mitochondrion	29.08	28.48
Zm00001d032543_P001	Maize	mitochondrion	29.92	27.66
Bra033215.1-P	Field mustard	mitochondrion	28.87	26.95
TraesCS1A01G168700.1	Wheat	mitochondrion	32.01	26.2
Bra020588.1-P	Field mustard	mitochondrion	26.78	26.07
Os10t0501200-00	Rice	mitochondrion	33.05	25.24
Bra036629.1-P	Field mustard	mitochondrion	24.9	24.95
Bra033321.1-P	Field mustard	mitochondrion	26.78	24.85
Bra028632.1-P	Field mustard	mitochondrion	20.71	24.5
Bra027131.1-P	Field mustard	mitochondrion	25.1	24.44
Bra031484.1-P	Field mustard	mitochondrion	25.1	24.39
Bra000902.1-P	Field mustard	mitochondrion	23.85	22.75
Bra001400.1-P	Field mustard	mitochondrion, plastid	32.43	20.69
Bra032865.1-P	Field mustard	cytosol	23.64	19.69
Bra031586.1-P	Field mustard	mitochondrion	21.13	19.02
Bra027226.1-P	Field mustard	plastid	23.01	18.27
Bra003559.1-P	Field mustard	cytosol	24.9	16.71
Bra032866.1-P	Field mustard	mitochondrion	18.41	13.79
Bra026128.1-P	Field mustard	cytosol	25.31	13.0

Protein Annotations

EnsemblPlants:Bra036673.1	EnsemblPlants:Bra036673.1-P	EnsemblPlantsGene:Bra036673	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
UniParc:UPI00025420B4	UniProt:M4F6G3	MapMan:35.1	:	:	:

Description

AT2G20710 (E=1e-224) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:5717869..5719397

Molecular Weight (calculated)

54749.6 Da

IEP (calculated)

8.341

GRAVY (calculated)

-0.301

Length

478 amino acids

Sequence
(BLAST)

001: MNHLLLLLRL VRPKPNYTLR SFPFHSTRTP PHDTLQRRVA RAGDPSASIL RVLEGWLDEG NPVKTSELHS IVKMLRKFSR FSHALQISDW MSEHRVHDIS
101: EGDIAIRLDL IAKVNGLGEA DKFFEKIPIE RRNYHLYGAL LNCYATKKVL HKADQLFHEM KDLGFLRGCL PYNVMLNLYI RCGKHALLEK LLREMDDGNV
201: KPDIFTVNTR LHAYSLVSDV EGMEKFLTRC ESDLGLDLDL DWRTYADAAN AYIKAGSTEK AMEMLRRSEQ LVSPQKRKHA YEVLMSFYGA AGEKQEVYRL
301: WALYKELGGF FNTGYISVIS ALFKAGDIEG VEKIMGEWEA GHSLFDVRIP HLLITGYCKK GMMDKAEEVA KMVLQETSTW ERLALGYKMA GEMEKAVERW
401: KKAIEVSKPG WRPHMVVLMS CVDYVEGQRD MEGLRKILRL LSERGHISYD QLLYDMKEAG GGLGWKIVDA MGSSQVQH

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.