Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
- nucleus 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY57695 | Canola | mitochondrion | 81.32 | 96.02 |
AT1G80270.2 | Thale cress | mitochondrion | 69.94 | 83.56 |
KRH66764 | Soybean | cytosol | 33.43 | 57.35 |
KRH69049 | Soybean | mitochondrion | 45.65 | 53.37 |
VIT_08s0007g05090.t01 | Wine grape | mitochondrion | 46.77 | 53.37 |
GSMUA_Achr5P27560_001 | Banana | cytosol | 37.64 | 52.24 |
KRH31614 | Soybean | mitochondrion | 43.4 | 51.5 |
GSMUA_Achr8P21680_001 | Banana | mitochondrion | 44.52 | 51.29 |
PGSC0003DMT400022632 | Potato | mitochondrion | 44.66 | 50.96 |
Solyc12g020050.1.1 | Tomato | plastid | 44.38 | 50.64 |
KRG95098 | Soybean | mitochondrion | 43.12 | 50.33 |
TraesCS3D01G195000.1 | Wheat | mitochondrion | 39.75 | 46.17 |
TraesCS3B01G220600.2 | Wheat | mitochondrion | 39.61 | 46.0 |
HORVU3Hr1G040710.1 | Barley | mitochondrion | 39.47 | 45.91 |
TraesCS3A01G191200.1 | Wheat | mitochondrion | 39.19 | 45.59 |
PGSC0003DMT400021596 | Potato | mitochondrion | 39.19 | 45.51 |
OQU86720 | Sorghum | mitochondrion | 38.9 | 45.19 |
GSMUA_Achr11P... | Banana | mitochondrion | 39.75 | 45.06 |
Zm00001d008224_P002 | Maize | mitochondrion | 39.33 | 45.02 |
Zm00001d040475_P001 | Maize | mitochondrion | 37.78 | 43.88 |
Os12t0170100-01 | Rice | mitochondrion | 37.64 | 43.86 |
Os01t0280400-00 | Rice | mitochondrion | 37.22 | 43.37 |
Bra027226.1-P | Field mustard | plastid | 35.81 | 42.36 |
Bra026128.1-P | Field mustard | cytosol | 54.78 | 41.89 |
Bra036673.1-P | Field mustard | mitochondrion | 16.71 | 24.9 |
Bra031484.1-P | Field mustard | mitochondrion | 16.85 | 24.39 |
Bra027131.1-P | Field mustard | mitochondrion | 16.57 | 24.03 |
Bra038762.1-P | Field mustard | mitochondrion | 16.29 | 23.77 |
Bra018528.1-P | Field mustard | mitochondrion | 17.13 | 23.74 |
Bra000902.1-P | Field mustard | mitochondrion | 16.57 | 23.55 |
Bra036629.1-P | Field mustard | mitochondrion | 15.59 | 23.27 |
Bra020588.1-P | Field mustard | mitochondrion | 16.01 | 23.22 |
Bra033321.1-P | Field mustard | mitochondrion | 16.29 | 22.52 |
Bra011054.1-P | Field mustard | mitochondrion | 10.67 | 22.29 |
Bra031586.1-P | Field mustard | mitochondrion | 16.57 | 22.22 |
Bra028632.1-P | Field mustard | mitochondrion | 11.8 | 20.79 |
Bra033215.1-P | Field mustard | mitochondrion | 14.33 | 19.92 |
Bra036496.1-P | Field mustard | plastid | 12.36 | 18.14 |
Bra032862.1-P | Field mustard | mitochondrion | 9.41 | 17.68 |
Bra032863.1-P | Field mustard | mitochondrion | 9.69 | 17.25 |
Bra032865.1-P | Field mustard | cytosol | 10.81 | 13.41 |
Bra001400.1-P | Field mustard | mitochondrion, plastid | 13.48 | 12.82 |
Bra032866.1-P | Field mustard | mitochondrion | 8.71 | 9.72 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:16.12.5.4.19 | EnsemblPlantsGene:Bra003559 | EnsemblPlants:Bra003559.1 | EnsemblPlants:Bra003559.1-P | ncoils:Coil |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005739 | GO:GO:0009536 | GO:GO:0009941 | InterPro:IPR002885 | InterPro:IPR011990 |
UniProt:M4CH76 | PFAM:PF01535 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF26 |
InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00025412F6 | SEG:seg | : |
Description
AT1G80270 (E=4e-257) | DNA-binding protein, putative
Coordinates
chrA07:+:13778650..13785715
Molecular Weight (calculated)
80632.3 Da
IEP (calculated)
8.126
GRAVY (calculated)
-0.570
Length
712 amino acids
Sequence
(BLAST)
(BLAST)
001: MSESTNQRQT GELLSTLWIS GAIVGVIRPS GSEDDKTMGF TQTKPRASSA TRQTSPTVTT SVKEKGKAAK DLFRGQNRHS RKERKTLNPC HFINIQHTTL
101: CSHFFFFVDS NFTRLSQRLR LGACCTTALY SKQEIPSGER SFFTLQSHSI LHDTLPRVYN MSSSMSNRLL SSTAGTKSDQ EEDDDLEDGF SELENSKSGQ
201: ESSTSSSSDD SDVDEGKLSA DEEEELELDL TETDDSKKTL EKKQSELFKA IVSAGGLSVG SALDKWVEEE GNEITRTEVA KAMLQLRRRR MYGRALQMSE
301: WLEANKKIEM NERDYASRLD LIVKTRGLEK GEAYVDKIPK SFRGEVMYRT LLANCVVACN VKKSELVFNR MKDLGFPRSG FTCDQMLLLY KRVDRKKIAD
401: VLLLMEKENV KPSLLTYKIL IDVKGSSNDI KGMEQVVETM KDEGVEPDFN TQAIIARHYS VAGLKEKAES VLKEMEGESL EANRRAFKDL LSIYASLGRE
501: DEVRRVWKIC EPKPRFEESL SAIQAFGKLN KVQEAEEVFE KVIKMDRRVS SNTFSVLLRV YVDHKMLSKG KDLVKRMAES GCRIEASTWD ALIRLYVEAG
601: EVEKADSLLS KASKQSHTKL MMSSFMYIMD EYAKRGDVHN TEKIFQKMRE VGYTSRLRQF QALMQGYLNA KAPAYGMRDR MKADNIFPNK AMAAQLAQGD
701: PFKKTTISDI LD
101: CSHFFFFVDS NFTRLSQRLR LGACCTTALY SKQEIPSGER SFFTLQSHSI LHDTLPRVYN MSSSMSNRLL SSTAGTKSDQ EEDDDLEDGF SELENSKSGQ
201: ESSTSSSSDD SDVDEGKLSA DEEEELELDL TETDDSKKTL EKKQSELFKA IVSAGGLSVG SALDKWVEEE GNEITRTEVA KAMLQLRRRR MYGRALQMSE
301: WLEANKKIEM NERDYASRLD LIVKTRGLEK GEAYVDKIPK SFRGEVMYRT LLANCVVACN VKKSELVFNR MKDLGFPRSG FTCDQMLLLY KRVDRKKIAD
401: VLLLMEKENV KPSLLTYKIL IDVKGSSNDI KGMEQVVETM KDEGVEPDFN TQAIIARHYS VAGLKEKAES VLKEMEGESL EANRRAFKDL LSIYASLGRE
501: DEVRRVWKIC EPKPRFEESL SAIQAFGKLN KVQEAEEVFE KVIKMDRRVS SNTFSVLLRV YVDHKMLSKG KDLVKRMAES GCRIEASTWD ALIRLYVEAG
601: EVEKADSLLS KASKQSHTKL MMSSFMYIMD EYAKRGDVHN TEKIFQKMRE VGYTSRLRQF QALMQGYLNA KAPAYGMRDR MKADNIFPNK AMAAQLAQGD
701: PFKKTTISDI LD
001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD
Arabidopsis Description
PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.