Factsheet for TraesCS6D01G079200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G091000.1	Wheat	mitochondrion	90.76	96.27
TraesCS6D01G079300.1	Wheat	mitochondrion	78.37	83.3
TraesCS6D01G079400.1	Wheat	plastid	64.33	77.16
TraesCS6D01G079100.1	Wheat	mitochondrion	67.1	75.78
TraesCS2D01G553100.1	Wheat	mitochondrion	52.5	52.11
PGSC0003DMT400023279	Potato	mitochondrion	33.83	36.97
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	33.27	36.14
AT4G01990.1	Thale cress	mitochondrion	33.27	35.86
TraesCS2D01G553300.1	Wheat	mitochondrion	36.97	35.71
VIT_07s0005g01630.t01	Wine grape	mitochondrion	30.87	35.38
CDX91822	Canola	mitochondrion	32.35	35.0
CDX90962	Canola	mitochondrion	32.35	34.93
Bra033321.1-P	Field mustard	mitochondrion	33.09	34.76
Bra000902.1-P	Field mustard	mitochondrion	32.16	34.73
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	30.87	34.43
CDY15237	Canola	mitochondrion	32.53	34.31
CDX89976	Canola	mitochondrion	32.53	34.17
KRH69203	Soybean	cytosol	24.21	33.68
KRH31780	Soybean	mitochondrion	29.21	33.19
AT1G02370.1	Thale cress	mitochondrion	31.05	31.28
PGSC0003DMT400007271	Potato	mitochondrion	27.91	31.26
Solyc01g100580.2.1	Tomato	mitochondrion	27.73	31.12
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.5	30.73
TraesCS1D01G166800.1	Wheat	mitochondrion	26.43	27.98
TraesCS5D01G112000.1	Wheat	mitochondrion	26.06	27.65
TraesCS2D01G389900.1	Wheat	plastid	25.88	27.4
TraesCS1D01G166700.1	Wheat	mitochondrion	24.77	27.07
TraesCS6D01G341400.1	Wheat	mitochondrion	23.29	24.23
TraesCS2D01G315700.1	Wheat	mitochondrion	18.67	22.9
TraesCS7D01G293300.1	Wheat	mitochondrion	18.3	19.3
TraesCS3D01G195000.1	Wheat	mitochondrion	21.81	19.25

Protein Annotations

EnsemblPlants:TraesCS6D01G079200.1	EnsemblPlantsGene:TraesCS6D01G079200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:45202238..45205243

Molecular Weight (calculated)

62095.1 Da

IEP (calculated)

9.360

GRAVY (calculated)

-0.404

Length

541 amino acids

Sequence
(BLAST)

001: MHIESFFSVQ AQKNLNKAHG TRPNRTASPP PMLRTAIPAA ARRRISFAPA RFAHELAQAQ AQVQSAVPGR DGLEPSWVPL YRRISKLSHG RQPGMAAAEM
101: TKYLRERRPL SEYQIVAYIR KLRKFKRHAC ALELMDWMEA RGAKLTHGHQ ALRLDLVSKV HGIQAAEEYF WSLPDILKSR KAYSSLLNCY GEHGMAFKGL
201: KFYEKMKAKN IVPNTLVYNS LMVLYKKAGQ PEKIPSTFEE MRESGITANS FTYFSLVESY VTMNDLEAAE KVLEELQKVA PVHWSLYTLM ANSYIKLELC
301: GKAEVALKKA EEVMNKDELS SWYFLLSIYA RCGNATEVKR IWESLKSTFK KCLNRSYLVM LQALSTNDDF ESLQQIFQEW ESSHEQYDMR ITNVMIKAYL
401: DKGMIDEAEA IRQRAMAKGR CDDRTIYIFA EFYLEKSNVT VALEILRDAK KMVTAHKWVP SKKLTSRFLK HYEESKDVDR VESFCECLRK LECLDAEAYE
501: GMMRTYIAAG KTNPSIAQRI EDDGIHVGPE TTKLLERVSG N

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.