Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076352 | Potato | cytosol, mitochondrion | 66.08 | 54.6 |
| PGSC0003DMT400047256 | Potato | extracellular | 26.33 | 32.2 |
| PGSC0003DMT400047255 | Potato | cytosol, mitochondrion, plastid | 35.95 | 28.51 |
| TraesCS1B01G188200.1 | Wheat | mitochondrion | 34.43 | 27.64 |
| TraesCS1D01G166700.1 | Wheat | mitochondrion | 34.43 | 27.47 |
| OQU91552 | Sorghum | mitochondrion | 33.92 | 26.27 |
| PGSC0003DMT400004477 | Potato | plastid | 31.39 | 25.78 |
| Os10t0501300-01 | Rice | mitochondrion | 33.42 | 25.73 |
| PGSC0003DMT400002590 | Potato | cytosol | 31.65 | 25.41 |
| Zm00001d032543_P001 | Maize | mitochondrion | 32.91 | 25.15 |
| Os10t0501000-01 | Rice | cytosol | 28.61 | 25.06 |
| PGSC0003DMT400032340 | Potato | mitochondrion | 30.63 | 25.0 |
| GSMUA_Achr5P20750_001 | Banana | mitochondrion | 34.18 | 24.73 |
| PGSC0003DMT400023279 | Potato | mitochondrion | 30.63 | 24.44 |
| TraesCS1A01G168700.1 | Wheat | mitochondrion | 35.19 | 23.8 |
| PGSC0003DMT400076417 | Potato | cytosol, mitochondrion | 28.35 | 22.81 |
| PGSC0003DMT400080049 | Potato | cytosol, plastid | 30.89 | 22.39 |
| Os10t0501200-00 | Rice | mitochondrion | 34.18 | 21.57 |
| PGSC0003DMT400011461 | Potato | mitochondrion | 21.01 | 20.75 |
| PGSC0003DMT400007271 | Potato | mitochondrion | 25.32 | 20.7 |
| PGSC0003DMT400031020 | Potato | cytosol | 6.08 | 20.17 |
| PGSC0003DMT400077284 | Potato | mitochondrion | 25.82 | 19.47 |
| PGSC0003DMT400012266 | Potato | cytosol, mitochondrion, plastid | 25.32 | 19.08 |
| PGSC0003DMT400031016 | Potato | cytosol | 14.43 | 18.75 |
| PGSC0003DMT400069375 | Potato | cytosol | 20.76 | 17.3 |
| PGSC0003DMT400092266 | Potato | mitochondrion | 8.1 | 17.3 |
| PGSC0003DMT400022632 | Potato | mitochondrion | 23.8 | 15.06 |
| PGSC0003DMT400021596 | Potato | mitochondrion | 22.78 | 14.68 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058755 | EnsemblPlantsGene:PGSC0003DMG400022826 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1625 |
| PFAM:PF01535 | PFAM:PF13812 | PFscan:PS51375 | PGSC:PGSC0003DMG400022826 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
| UniParc:UPI000295C239 | UniProt:M1C391 | MapMan:35.1 | : | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022826]
Coordinates
chr10:+:4637979..4640996
Molecular Weight (calculated)
45597.3 Da
IEP (calculated)
7.677
GRAVY (calculated)
-0.278
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSLKDYRR YKHALEVSYW MTDKRCFSPE YSDIGVRIHL IFKVKGLEEV EKYINSIPQQ FKGFQTYSAL LNCYASEKSV EKAEAIMQKV KDMGLAHNPL
101: CYSFMMKMYY RTGDWEKMDN MMNEMEGKGI NFDQFILIIR LSAYAAAGDS DGMDKIARML ESDKRITLNW NAYSIIAEKY LNVGQVEKAL TMLNKLEGML
201: ATSKNKQGLL GVLLNLYAQA GKKEELHRVW DLFKQNLRIY NKGYISMMNS LMKFDDIEGV EQIFEEWESG GLSYDFRIPN FLIGAYCRNG LLRKAEALFD
301: RGLSKGGVPT VITWCHLASG YIHEDQVSKA IEALNKAMSI CPPKFIPSKE TLRTCVEYWE NQGNVEKAEE FVRSLEVEGV FSSVFCEKLW CFINK
101: CYSFMMKMYY RTGDWEKMDN MMNEMEGKGI NFDQFILIIR LSAYAAAGDS DGMDKIARML ESDKRITLNW NAYSIIAEKY LNVGQVEKAL TMLNKLEGML
201: ATSKNKQGLL GVLLNLYAQA GKKEELHRVW DLFKQNLRIY NKGYISMMNS LMKFDDIEGV EQIFEEWESG GLSYDFRIPN FLIGAYCRNG LLRKAEALFD
301: RGLSKGGVPT VITWCHLASG YIHEDQVSKA IEALNKAMSI CPPKFIPSKE TLRTCVEYWE NQGNVEKAEE FVRSLEVEGV FSSVFCEKLW CFINK
001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.