Factsheet for HORVU1Hr1G080900.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G002280.1
HORVU6Hr1G028330.1
HORVU7Hr1G115590.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	HORVU3Hr1G002280.1	AT5G20280.1	21798944
AT3G49240.1	HORVU6Hr1G028330.1	AT5G20280.1	21798944
AT3G49240.1	HORVU7Hr1G115590.10	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G357400.1	Wheat	mitochondrion	85.82	90.41
TraesCS1B01G369200.1	Wheat	mitochondrion	86.12	89.74
TraesCS1A01G352600.1	Wheat	cytosol	54.48	85.48
EES19865	Sorghum	mitochondrion	71.94	72.59
Zm00001d038733_P001	Maize	mitochondrion	71.94	72.37
Os05t0534000-01	Rice	cytosol	28.66	66.67
HORVU3Hr1G052280.1	Barley	cytosol, plastid	48.06	48.57
HORVU3Hr1G052300.1	Barley	plastid	9.25	46.27
GSMUA_Achr9P05870_001	Banana	mitochondrion	44.18	46.18
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	44.93	45.81
Bra019587.1-P	Field mustard	cytosol	33.28	39.68
KRH53501	Soybean	mitochondrion	37.16	39.4
Bra017999.1-P	Field mustard	cytosol	32.39	38.48
CDX86985	Canola	mitochondrion	33.58	38.2
CDY00193	Canola	plastid	32.69	37.69
VIT_16s0098g01840.t01	Wine grape	plastid	36.72	37.67
KRH64444	Soybean	mitochondrion	35.37	37.56
CDY08118	Canola	plastid	33.28	37.42
CDX83077	Canola	mitochondrion, plastid	34.18	36.47
PGSC0003DMT400023464	Potato	plastid	35.22	36.2
AT3G49240.1	Thale cress	cytosol, plastid	33.58	35.77
CDY05914	Canola	cytosol	7.91	35.1
CDX68524	Canola	cytosol, mitochondrion, plastid	32.84	35.03
Bra029944.1-P	Field mustard	mitochondrion, plastid	33.58	34.83
Solyc03g083280.2.1	Tomato	nucleus	24.33	32.09
CDY05913	Canola	cytosol	15.97	21.97
HORVU2Hr1G011400.1	Barley	cytosol	15.07	12.61
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	15.37	11.78

Protein Annotations

EnsemblPlants:HORVU1Hr1G080900.3	EnsemblPlantsGene:HORVU1Hr1G080900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1616	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000B4896EE	UniProt:A0A287GGD7	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr1H:-:526608506..526614410

Molecular Weight (calculated)

72896.3 Da

IEP (calculated)

5.014

GRAVY (calculated)

-0.130

Length

670 amino acids

Sequence
(BLAST)

001: LPALPDPIIR SLNPRLLPRT AAPEPPPEMS LSKPLAARRL VPALFPLAHA DAASAAASRR ARRRGAFVST PPAPPPSPSS VRLAEPLPSL APSRLALHNS
101: VLALLSPTPA AQAPDLDEAA LLTRHALHSN CRPSSFTCIA VLAALLRARR LDDFFALHRF ALQAAVPPTA ATHALYLSAL AARRLPDAAL LHLRLIARPG
201: SPVPPSPTAY RVVVKCLVAD HGRLADAVEL KDEMLASGFV GPDPHVYSLL MAGFVEARDG AKAVELYQEL QDKLGGEPVL DGIVYGSLMK AYFLMGMEEK
301: AMECYKEVFS PDSEVRFGTE SYNEVVDALG QNQRLEDALN LFDRMLREHD PPLRITVDVR SFSVMVDAYC AAGRFEDAIA VFRRMGEYKV VPDVAAYNNL
401: IRHLGLNRLV DEAEVLHKEM CEQILVADEE TCVLLMEACF KADRIDDGIS YFDKMAELEL KPDASAYHRI VDGLVGLSLL DKAQEYFDQM REKGIHPSIA
501: TYETLLKAYV DVGAARLDDA AKVAKCILLD ENVVFSDEMR ELLEGALRGE GREDDIAKLY EDVEREKAEA VLRAEEEKAR AEALAREERA ARRAEAAAKD
601: EAAAKASAAA IEAIIGHRRK TEGETAEPAS TPNALGGGFL SRLGLSSPGE GAPQDTPIIS TETKDGQEQF

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.