CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92473
CDY35815
CDY45096

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	CDX92473	AT5G20280.1	21798944
AT3G49240.1	CDY35815	AT5G20280.1	21798944
AT3G49240.1	CDY45096	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019587.1-P	Field mustard	cytosol	87.61	90.57
CDX86985	Canola	mitochondrion	87.78	86.59
CDY05914	Canola	cytosol	20.14	77.48
CDY08118	Canola	plastid	78.49	76.51
CDX68524	Canola	cytosol, mitochondrion, plastid	82.62	76.43
CDX83077	Canola	mitochondrion, plastid	80.38	74.36
AT3G49240.1	Thale cress	cytosol, plastid	79.52	73.45
KRH64444	Soybean	mitochondrion	61.62	56.74
KRH53501	Soybean	mitochondrion	59.38	54.59
VIT_16s0098g01840.t01	Wine grape	plastid	59.72	53.14
PGSC0003DMT400023464	Potato	plastid	59.04	52.61
HORVU3Hr1G052300.1	Barley	plastid	12.05	52.24
Solyc03g083280.2.1	Tomato	nucleus	42.69	48.82
EES03220	Sorghum	mitochondrion, plastid	49.74	43.39
Zm00001d044388_P001	Maize	plastid	40.79	42.78
CDY05913	Canola	cytosol	35.8	42.71
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	47.33	41.86
GSMUA_Achr9P05870_001	Banana	mitochondrion	45.96	41.65
Os11t0433600-01	Rice	nucleus	34.42	41.07
TraesCS3A01G214000.1	Wheat	cytosol	46.64	40.87
TraesCS3D01G216600.1	Wheat	cytosol	46.47	40.72
HORVU3Hr1G052280.1	Barley	cytosol, plastid	46.47	40.72
TraesCS3B01G244700.1	Wheat	cytosol	46.13	39.82
TraesCS1B01G369200.1	Wheat	mitochondrion	38.04	34.37
EES19865	Sorghum	mitochondrion	38.55	33.73
TraesCS1D01G357400.1	Wheat	mitochondrion	36.83	33.65
HORVU1Hr1G080900.3	Barley	cytosol, plastid	37.69	32.69
Zm00001d038733_P001	Maize	mitochondrion	37.01	32.28
TraesCS1A01G352600.1	Wheat	cytosol	23.24	31.62
Os05t0534000-01	Rice	cytosol	12.56	25.35
CDY21873	Canola	cytosol	4.65	25.0
CDX93444	Canola	mitochondrion	25.3	19.32
CDY09648	Canola	extracellular, mitochondrion, plastid	12.05	18.57
CDX94912	Canola	mitochondrion	25.99	18.24
CDY31037	Canola	mitochondrion	25.3	18.22
CDY34898	Canola	mitochondrion	26.68	18.15
CDY20645	Canola	mitochondrion	25.3	17.91
CDY25066	Canola	cytosol	3.79	17.05
CDY53878	Canola	mitochondrion	3.79	15.28
CDY65945	Canola	cytosol	17.73	15.17
CDX95653	Canola	mitochondrion	6.71	9.73
CDY25062	Canola	mitochondrion	5.68	9.09
CDY33104	Canola	mitochondrion	5.68	8.97
CDY37773	Canola	mitochondrion	6.37	8.71
CDX80067	Canola	mitochondrion	5.85	7.82
CDX80068	Canola	mitochondrion	6.88	7.56
CDY10671	Canola	mitochondrion	5.16	7.52
CDY37774	Canola	mitochondrion	6.54	6.91
CDX95410	Canola	cytosol	0.52	5.77
CDX71714	Canola	cytosol	1.55	3.7
CDY53879	Canola	cytosol	1.03	3.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDY00193	ProteinID:CDY00193	ProteinID:CDY00193.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00109722001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE28F9	SEG:seg

Description

BnaA06g20940D

Coordinates

chrLK031917:+:28177..30068

Molecular Weight (calculated)

65892.6 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.432

Length

581 amino acids

Sequence
(BLAST)

001: MSISKAALLQ TLARAYRPPP FSAVRRMSVA TQEEAAAAES RRRKRRIRME PPPLNRSNQP QISRPIPNPN IPKLPESVSA LTGKRLDLHN HILKLIRQND
101: LEEAALYTRH SVYSNSRPTI FTVNAVLTAQ LRQSKYGALL QLHGFINQAG IAANIITYNL IFQAYLDLRK PDVALEHYKL FIDNAPLNPS VATFRILVKG
201: LVDNGSLEKA MEIKEDMSVR GFVPDPVVYS YLMIGCVRKS DADGAFKLYE ELKEKLGGFV EDGVVYGLLM KGYFMKGMEK EAMECCEEAI GENSKVRMSA
301: MAYNYVLEAL GENGKFDEAL KLFDEMKREH DPPRRLALNL GSFNVMVNGY CGEGKFEEAL EVFRQMGEFS CSPDTLSFNN LMNQLCENGL LAEAEKLYNE
401: MDEKKVKPDE YTYGLLMDTC FKEGKIEEGA AYYKTMVESS LRTNLAVYNR LQDQLVKAGK LGDAKSFFDM MVSKLKMDDE AYKFIMRALS EAGRLDEMLK
501: IVDEMLGDET VRVSEEIQEF VKEELRKGGR EDDLQKLMDE KERLKEEAKA KELEAAEAKK RSTNISIASL MSPKLEEEKK E

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.