CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71219
CDX71220
CDY36631
CDY37227
CDY62312

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	CDX71219	AT2G15400.1	16489121
AT1G10270.1	CDX71220	AT2G15400.1	16489121
AT1G10270.1	CDY36631	AT2G15400.1	16489121
AT1G10270.1	CDY37227	AT2G15400.1	16489121
AT1G10270.1	CDY62312	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31037	Canola	mitochondrion	74.06	75.34
CDX93444	Canola	mitochondrion	68.21	73.59
CDY65945	Canola	cytosol	60.29	72.9
CDY34898	Canola	mitochondrion	75.03	72.13
CDX94912	Canola	mitochondrion	72.72	72.1
AT1G10270.1	Thale cress	mitochondrion	73.93	66.48
VIT_12s0035g01700.t01	Wine grape	mitochondrion	39.1	51.2
GSMUA_Achr10P...	Banana	mitochondrion, plastid	32.52	43.2
CDY25066	Canola	cytosol	5.85	37.21
CDY09648	Canola	extracellular, mitochondrion, plastid	16.32	35.54
TraesCS2A01G524300.1	Wheat	mitochondrion	34.96	34.7
Zm00001d032900_P001	Maize	mitochondrion	34.23	34.56
CDY53878	Canola	mitochondrion	5.72	32.64
TraesCS2D01G527300.1	Wheat	mitochondrion	33.86	32.55
Os05t0365500-01	Rice	nucleus	36.05	32.49
CDY21873	Canola	cytosol	4.26	32.41
Solyc01g103160.2.1	Tomato	nucleus	38.25	32.24
OQU93028	Sorghum	mitochondrion	34.35	32.23
TraesCS2D01G061700.1	Wheat	golgi	35.81	30.95
TraesCS2A01G063500.1	Wheat	mitochondrion	35.08	30.67
PGSC0003DMT400064089	Potato	mitochondrion, plastid	38.37	30.41
OQU78362	Sorghum	cytosol	25.21	30.22
TraesCS2B01G554300.1	Wheat	nucleus	35.81	29.17
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	35.2	28.5
CDY00193	Canola	plastid	17.91	25.3
HORVU2Hr1G011400.1	Barley	cytosol	24.6	25.22
CDX68524	Canola	cytosol, mitochondrion, plastid	18.64	24.36
CDX83077	Canola	mitochondrion, plastid	18.51	24.2
CDX86985	Canola	mitochondrion	17.17	23.94
CDY08118	Canola	plastid	17.05	23.49
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	24.97	23.46
CDX95653	Canola	mitochondrion	11.33	23.19
CDY25062	Canola	mitochondrion	9.74	22.04
CDY33104	Canola	mitochondrion	9.74	21.74
CDX95410	Canola	cytosol	1.34	21.15
CDY37773	Canola	mitochondrion	10.6	20.47
CDX80067	Canola	mitochondrion	10.11	19.08
CDY10671	Canola	mitochondrion	8.77	18.05
CDX71714	Canola	cytosol	5.12	17.28
CDX80068	Canola	mitochondrion	10.96	17.01
CDY05913	Canola	cytosol	9.38	15.81
CDY37774	Canola	mitochondrion	10.47	15.64
CDY05914	Canola	cytosol	2.56	13.91
CDY53879	Canola	cytosol	1.95	8.89

Protein Annotations

EnsemblPlants:CDY20645	EnsemblPlantsGene:GSBRNA2T00012828001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY20645	ProteinID:CDY20645.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EC7E74	UniProt:A0A078G299	MapMan:35.1	:

Description

BnaC08g14130DBnaC08g14130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G299]

Coordinates

chrLK032110:-:433407..435905

Molecular Weight (calculated)

92069.9 Da

IEP (calculated)

7.963

GRAVY (calculated)

-0.705

Length

821 amino acids

Sequence
(BLAST)

001: MSLCHLLRRS SLIHRLSSPT TTIRIPLPIS HIHQRFYNIS TSPENEPPDT NHSPPIPHPT IPHRTTSFSS AEEAAAERRR RKRRLRIEPP LHALRRDPSS
101: PPPKRDPNAP RLPESTSSLF GPRLNLHNRV QSLIRASDLD AASKLARQSV FSRTPPIVFT CNAIIAAMYR AERYGESISL FDYFFKKSSI VPNVVSYNQI
201: INAHCDEGHV EEALEVYRYV LTNSPFAPSS VTYRHLTKGL VSSGRLGDAA SLLREMLSKG QAADSIVYNN LIKGYLELGD LIKANEFFDE LKSKCTVYDG
301: IVNATFMEYW FEKGNDEEAM ECYRSLLEKR FRMHPHTGNV LLGVFLKYGK KNEAWGLFDE MLDNHTLPDI SSVNSETVSI MVNECFEMGE FEEAVEAFKR
401: VGRKPTSRPL VMDYVGYCNI VTRFCERGML TEAERLFAES VAKSWPPDAA SHRVMIDAYL KAGRVEDAVK MLDRMVDVNL RVVADFGTRV FGELIENGRV
501: RECAEVLSKM GEKEPKPDPL IYDVVVRGLC DGGALDQAKD VIGQMVEYGV GVAHVLREFI VESFEKAGRR EEIEKTLNTV TRPVRNSVQY GKTPPKVPSV
601: LGANGTAGQT AGGTYKANNG QNPSRFTSVN HQQQPWSNQT AGQQPPSWSS QAPGYQQQQS WSQKPGWSSP SGHQQSWPNQ TTGQQKPLAN QSTGHHQSCG
701: NQTTGQQKQW ANHSTDNQQQ PWASQNTGHQ QQWANQTPGQ QQQWTNQTAG QQSAWTGQQK QWSNQTANHQ QSQWSNPTSG QMANQAPWSN SENGHLPQEQ
801: EAGSSHEWQG GEEKKVTELS K

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.