CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93444
CDX94912
CDY20645
CDY31037
CDY34898
CDY65945

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	CDX93444	AT1G10270.1	16489121
AT2G15400.1	CDX94912	AT1G10270.1	16489121
AT2G15400.1	CDY20645	AT1G10270.1	16489121
AT2G15400.1	CDY31037	AT1G10270.1	16489121
AT2G15400.1	CDY34898	AT1G10270.1	16489121
AT2G15400.1	CDY65945	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015218.1-P	Field mustard	nucleus	100.0	100.0
CDX71219	Canola	nucleus	83.39	94.33
CDY62312	Canola	nucleus	92.79	93.08
CDY37227	Canola	nucleus	93.42	92.83
AT2G15430.1	Thale cress	nucleus	92.16	92.16
AT2G15400.1	Thale cress	nucleus	83.39	83.39
KRG89365	Soybean	nucleus	82.76	82.5
KRH50412	Soybean	nucleus	82.45	82.45
VIT_03s0180g00050.t01	Wine grape	nucleus	82.13	82.39
Solyc05g010300.2.1	Tomato	nucleus	78.37	78.37
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	71.79	72.47
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	71.16	72.06
TraesCS7D01G509400.1	Wheat	nucleus	70.22	71.11
Os09t0110400-02	Rice	nucleus	73.35	70.91
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	73.04	70.61
TraesCS5B01G158300.1	Wheat	nucleus	72.41	69.79
TraesCS5A01G160900.1	Wheat	plastid	72.41	69.79
EER98576	Sorghum	nucleus	71.47	69.51
HORVU7Hr1G115770.2	Barley	nucleus	35.42	66.86
Zm00001d005295_P001	Maize	extracellular	71.47	65.14
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	72.1	63.36
HORVU5Hr1G050250.6	Barley	nucleus	71.47	61.79
GSMUA_Achr3P13120_001	Banana	cytosol	26.96	61.43
CDX71220	Canola	nucleus	83.07	59.68
GSMUA_Achr3P13130_001	Banana	cytosol	12.54	34.78
CDY40501	Canola	cytosol	26.33	22.11
CDY54765	Canola	cytosol	25.71	21.47
CDY24544	Canola	cytosol	25.39	20.3
CDY34129	Canola	cytosol	24.45	19.55

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	GO:A0A078HFV5
UniProt:A0A078HFV5	EnsemblPlants:CDY36631	ProteinID:CDY36631	ProteinID:CDY36631.1	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3
InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00062367001	InterPro:IPR036603
InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2
InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI000254464F

Description

BnaA07g04260DBnaA07g04260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFV5]

Coordinates

chrLK032380:+:32935..34588

Molecular Weight (calculated)

35430.0 Da

IEP (calculated)

4.353

GRAVY (calculated)

-0.266

Length

319 amino acids

Sequence
(BLAST)

001: MDSGATYQRF PKVKIRELKD DYAKFELRDT DVSMANALRR VMISEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMSMRFSRD CDACDGDGQC
101: EFCSVEFRLS AKCVTDQTLD VTSKDLYSAD PTVTPVDFGD SSGADSSEQR GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLTDDEKI DLIESSPTKV FDFDAVTRQV VVVDPEAYTY DEEVIKKAEA MGKQGLIEIR PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.