Factsheet for TraesCS5D01G165800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G063500.1
TraesCS2A01G524300.1
TraesCS2B01G076200.1
TraesCS2B01G554300.1
TraesCS2D01G061700.1
TraesCS2D01G527300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	TraesCS2A01G063500.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2A01G524300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G076200.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G554300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G061700.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G527300.1	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G160900.1	Wheat	plastid	90.63	99.4
TraesCS5B01G158300.1	Wheat	nucleus	90.36	99.09
TraesCS7D01G509400.1	Wheat	nucleus	78.51	90.48
HORVU5Hr1G050250.6	Barley	nucleus	89.26	87.8
Os09t0110400-02	Rice	nucleus	79.34	87.27
EER98576	Sorghum	nucleus	76.03	84.15
Zm00001d005295_P001	Maize	extracellular	75.76	78.57
VIT_03s0180g00050.t01	Wine grape	nucleus	65.29	74.53
KRH50412	Soybean	nucleus	64.74	73.67
KRG89365	Soybean	nucleus	64.46	73.12
CDY62312	Canola	nucleus	63.64	72.64
CDY37227	Canola	nucleus	63.91	72.27
Bra039839.1-P	Field mustard	nucleus	63.91	72.27
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	65.56	72.12
CDY36631	Canola	nucleus	63.36	72.1
Bra015218.1-P	Field mustard	nucleus	63.36	72.1
Solyc05g010300.2.1	Tomato	nucleus	63.36	72.1
AT2G15430.1	Thale cress	nucleus	62.53	71.16
CDX71219	Canola	nucleus	54.82	70.57
AT2G15400.1	Thale cress	nucleus	58.95	67.08
GSMUA_Achr3P13120_001	Banana	cytosol	23.14	60.0
GSMUA_Achr3P13130_001	Banana	cytosol	14.88	46.96
CDX71220	Canola	nucleus	56.75	46.4
TraesCS1D01G238500.1	Wheat	cytosol	24.24	24.79

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.1	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603	InterPro:IPR036643	PFAM:PF01000
PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2	InterPro:RBP11-like	InterPro:RNApol_insert_sf
SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	EnsemblPlantsGene:TraesCS5D01G165800	EnsemblPlants:TraesCS5D01G165800.2	TIGR:cd07031
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:257500181..257510723

Molecular Weight (calculated)

40563.2 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.393

Length

363 amino acids

Sequence
(BLAST)

001: MERSAAGASY QRFPRVRIRE LKDEYAKFEL KDTDASMANA LRRVMIAEVP TVAIDLVEIE SNSSVLNDEF LAHRLGLIPL TSSAAMSMRF SRDCDACDGD
101: GSCEYCSVEF HLAARATDSG QTLEVTSTKD LRSTDPKVCP VDQQREYQQA LGNVDAYEPD AAGDHRLYKW TMGMVAAAYT GRGRGRRRWN LPARNRWKGI
201: LIVKLRRGQE LRLRAIARKG IGKDHAKWSP AATVTFMYEP DIRINQELME TLTLEEKQSW VESSPTKVFD IDPVTQQVTI VDPEAYTYDD EVIKKAEAMG
301: KPGLVEINAK EDSFVFTVET TGAITAYELI MNAITVLRQK LDAVRLQDDD GDLGELGAHL IGG

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.