Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018451.1-P | |
| Bra019952.1-P | |
| Bra031706.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G15400.1 | Bra018451.1-P | AT1G10270.1 | 16489121 |
| AT2G15400.1 | Bra019952.1-P | AT1G10270.1 | 16489121 |
| AT2G15400.1 | Bra031706.1-P | AT1G10270.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37227 | Canola | nucleus | 99.07 | 99.07 |
| Bra015218.1-P | Field mustard | nucleus | 93.15 | 93.73 |
| AT2G15430.1 | Thale cress | nucleus | 90.34 | 90.91 |
| AT2G15400.1 | Thale cress | nucleus | 82.87 | 83.39 |
| KRH50412 | Soybean | nucleus | 81.93 | 82.45 |
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 81.62 | 82.39 |
| KRG89365 | Soybean | nucleus | 81.62 | 81.88 |
| Solyc05g010300.2.1 | Tomato | nucleus | 78.19 | 78.68 |
| TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 71.65 | 73.02 |
| TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 71.65 | 72.78 |
| Os09t0110400-02 | Rice | nucleus | 73.52 | 71.52 |
| TraesCS7D01G509400.1 | Wheat | nucleus | 70.09 | 71.43 |
| EER98576 | Sorghum | nucleus | 72.27 | 70.73 |
| GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 72.59 | 70.61 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 72.59 | 70.39 |
| TraesCS5A01G160900.1 | Wheat | plastid | 72.59 | 70.39 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 35.2 | 66.86 |
| Zm00001d005295_P001 | Maize | extracellular | 72.27 | 66.29 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 72.27 | 63.91 |
| HORVU5Hr1G050250.6 | Barley | nucleus | 71.65 | 62.33 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 26.79 | 61.43 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 13.08 | 36.52 |
| Bra040351.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 23.36 | 21.87 |
| Bra027125.1-P | Field mustard | cytosol | 25.55 | 21.47 |
| Bra031493.1-P | Field mustard | cytosol | 24.61 | 19.8 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | EnsemblPlantsGene:Bra039839 |
| EnsemblPlants:Bra039839.1 | EnsemblPlants:Bra039839.1-P | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0046983 | InterPro:IPR036603 | InterPro:IPR036643 | UniProt:M4FFG5 | PFAM:PF01000 |
| PFAM:PF01193 | ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 | InterPro:RBP11-like | InterPro:RNApol_insert_sf |
| SMART:SM00662 | SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI000253EB1A | : | : |
Description
AT2G15430 (E=5e-166) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
Coordinates
chrScaffold000178:+:169186..170427
Molecular Weight (calculated)
35593.3 Da
IEP (calculated)
4.383
GRAVY (calculated)
-0.194
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTGATYQRF PKVKIRELKD DYAKFELRDT DVSMANALRR VMISEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMNMRFSRD CDACDGDGQC
101: EFCSVEFHLS AKCVTDQTLD VTSRDLYSAD ATVTPVDFGV DSSGVADSGE QRGIIIVKLR RGQELKLRAI ARKGIGKDHA KWSPAATVTF MYEPDIIINE
201: DMMDTLTDEE KIDLIESSPT KVFDFDSVTR QVVVVDPEAY TYDEEVIKKA EAMGKVGLVE IRPKDDSFIF TVESTGAVKA SQLVLNAIVL LKQKLDAVRL
301: SDDTVEADDQ FGELGAHMRG G
101: EFCSVEFHLS AKCVTDQTLD VTSRDLYSAD ATVTPVDFGV DSSGVADSGE QRGIIIVKLR RGQELKLRAI ARKGIGKDHA KWSPAATVTF MYEPDIIINE
201: DMMDTLTDEE KIDLIESSPT KVFDFDSVTR QVVVVDPEAY TYDEEVIKKA EAMGKVGLVE IRPKDDSFIF TVESTGAVKA SQLVLNAIVL LKQKLDAVRL
301: SDDTVEADDQ FGELGAHMRG G
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.