Factsheet for Bra040351.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99212	Soybean	cytosol	12.54	61.43
CDY34129	Canola	cytosol	69.1	59.4
Bra031493.1-P	Field mustard	cytosol	68.51	58.9
Bra027125.1-P	Field mustard	cytosol	57.73	51.83
AT1G60620.1	Thale cress	nucleus	56.56	50.39
VIT_19s0015g00780.t01	Wine grape	cytosol	53.64	49.46
Solyc12g015780.1.1	Tomato	nucleus	54.23	47.33
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	54.23	47.33
KRG98458	Soybean	nucleus	53.06	46.91
KRH46412	Soybean	nucleus	52.48	45.8
TraesCS1D01G238500.1	Wheat	cytosol	47.23	45.63
TraesCS1B01G250000.1	Wheat	cytosol	47.23	45.63
TraesCS1A01G233400.1	Wheat	nucleus	47.23	45.63
GSMUA_Achr1P19210_001	Banana	cytosol	48.4	44.99
GSMUA_Achr7P06070_001	Banana	nucleus	48.1	44.59
Os03t0295400-01	Rice	nucleus	48.1	43.54
Zm00001d054013_P002	Maize	nucleus	46.94	43.28
KXG29694	Sorghum	cytosol	45.77	42.43
HORVU1Hr1G057510.1	Barley	nucleus, plastid	48.1	40.94
Os02t0723600-00	Rice	cytosol	34.11	39.0
Bra015218.1-P	Field mustard	nucleus	22.16	23.82
Bra039839.1-P	Field mustard	nucleus	21.87	23.36

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	EnsemblPlantsGene:Bra040351
EnsemblPlants:Bra040351.1	EnsemblPlants:Bra040351.1-P	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603
InterPro:IPR036643	UniProt:M4FGX3	PFAM:PF01000	PFAM:PF01193	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13
InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553
UniParc:UPI000253EC8C	SEG:seg	:	:	:	:

Description

AT1G60620 (E=7e-042) ATRPAC43 | ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization

Coordinates

chrScaffold000199:-:8545..10466

Molecular Weight (calculated)

38472.0 Da

IEP (calculated)

5.361

GRAVY (calculated)

-0.376

Length

343 amino acids

Sequence
(BLAST)

001: MATKEGEGEV KTIVTEEEKT FTKNFNIMDL PEIPTGLPPH LQLPLAFVSF FGLEYQIMGL TASVVYSGAY NGVGVDNTIA NAFRRILLAE LSTMAFEKVF
101: IANNTSIVQD EVIAQRMGLV PIAADPKLFE YISENDQPNE KNTIVFKLHT KCAKSEGRKK GDSNSKPKTY TSFIRSQEES FPEFTDNPIT PSYPDILIAK
201: LSPGHEIEPE AHAVKGIGKT HAKWSPVATA WEVEDEDAER LVEACPVKVF DIEDLGNGRN RERVARPRNC TLCMQCMREN YGEEVKGEGK QRKKWIENVA
301: LRRVKNHFIF KIESTGSLPP DVLFTEAVKI LEDKCERVIA NLS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.