CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46412	Soybean	nucleus	98.45	97.2
KRG99212	Soybean	cytosol	15.98	88.57
VIT_19s0015g00780.t01	Wine grape	cytosol	70.36	73.39
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	67.53	66.67
GSMUA_Achr1P19210_001	Banana	cytosol	62.89	66.12
TraesCS1D01G238500.1	Wheat	cytosol	60.31	65.92
TraesCS1B01G250000.1	Wheat	cytosol	60.31	65.92
Solyc12g015780.1.1	Tomato	nucleus	66.49	65.65
AT1G60620.1	Thale cress	nucleus	64.95	65.45
TraesCS1A01G233400.1	Wheat	nucleus	59.79	65.35
AT1G60850.4	Thale cress	cytosol	62.89	65.07
CDY54765	Canola	cytosol	63.92	64.92
Bra027125.1-P	Field mustard	cytosol	63.92	64.92
CDY40501	Canola	cytosol	62.37	63.68
GSMUA_Achr7P06070_001	Banana	nucleus	60.05	62.97
Bra031493.1-P	Field mustard	cytosol	64.69	62.91
CDY34129	Canola	cytosol	64.43	62.66
CDY24544	Canola	cytosol	64.43	62.66
KXG29694	Sorghum	cytosol	59.28	62.16
Zm00001d054013_P002	Maize	nucleus	59.28	61.83
Os03t0295400-01	Rice	nucleus	59.79	61.21
Os02t0723600-00	Rice	cytosol	45.36	58.67
HORVU1Hr1G057510.1	Barley	nucleus, plastid	60.82	58.56
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	46.91	53.06
KRH50412	Soybean	nucleus	23.97	29.15
KRG89365	Soybean	nucleus	23.71	28.75

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	EMBL:ACUP02010889
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	EnsemblPlantsGene:GLYMA_18G075300	GO:GO:0001054	GO:GO:0001056
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360
GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0046983	UniProt:I1N089	InterPro:IPR036603	InterPro:IPR036643	EnsemblPlants:KRG98458	ProteinID:KRG98458
ProteinID:KRG98458.1	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13
InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553
UniParc:UPI000233F53C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:7145007..7150634

Molecular Weight (calculated)

43419.8 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.295

Length

388 amino acids

Sequence
(BLAST)

001: MSSSSSEDES MSEQSNELGL DFILSLDNVP SKLPPHLELF KTRVLCNNDA PVHTDTVQYS GAYAILGVDN SVRLDSFCEN FKVEVKRLTD SDIEFDMIGI
101: DPAIANAFRR ILIAEVPTMA IERVYIANNT SVVQDEVLSH RLGLIPIRAD PRLFEYPENA GDDKNEKNTI VFKLHVRCQV GQPRITVKSD KLKWLPNGSE
201: LPCEDVKPNA GSKPKTFTSF TCSQDSLPEF SNNSIGLTYS DIILAKLGPG QEIELEAHAV KGIGKTHAKW SPVATAWYRM LPEVVLLEAV EDELAEELKN
301: KCPVNVFDIE DIGKGKRRAK VARPRDCTLC RECIRGGKEW EDRVSLRRVK NHFIFTIEST GALPPEVLFT EAVKILEDKC ERVITELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.