CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24544	Canola	cytosol	97.49	97.49
CDY54765	Canola	cytosol	71.18	74.35
AT1G60620.1	Thale cress	nucleus	71.68	74.29
CDY40501	Canola	cytosol	69.67	73.16
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	59.4	69.1
VIT_19s0015g00780.t01	Wine grape	cytosol	62.66	67.2
KRG99212	Soybean	cytosol	11.78	67.14
KRG98458	Soybean	nucleus	62.66	64.43
Solyc12g015780.1.1	Tomato	nucleus	63.16	64.12
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	63.16	64.12
GSMUA_Achr1P19210_001	Banana	cytosol	58.65	63.41
KRH46412	Soybean	nucleus	62.16	63.1
TraesCS1D01G238500.1	Wheat	cytosol	54.89	61.69
TraesCS1B01G250000.1	Wheat	cytosol	54.89	61.69
TraesCS1A01G233400.1	Wheat	nucleus	54.89	61.69
GSMUA_Achr7P06070_001	Banana	nucleus	56.64	61.08
Os03t0295400-01	Rice	nucleus	55.39	58.31
Zm00001d054013_P002	Maize	nucleus	53.88	57.8
KXG29694	Sorghum	cytosol	53.38	57.57
Os02t0723600-00	Rice	cytosol	41.85	55.67
HORVU1Hr1G057510.1	Barley	nucleus, plastid	55.39	54.84
CDY62312	Canola	nucleus	19.55	24.53
CDY36631	Canola	nucleus	19.55	24.45
CDY37227	Canola	nucleus	19.55	24.3
CDX71219	Canola	nucleus	17.04	24.11
CDX71220	Canola	nucleus	19.3	17.34

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	GO:A0A078H9G8
UniProt:A0A078H9G8	EnsemblPlants:CDY34129	ProteinID:CDY34129	ProteinID:CDY34129.1	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert
GO:GO:0003674	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00056087001	InterPro:IPR036603	InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193
PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662
SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI0004EC4D0E	SEG:seg	:	:

Description

BnaC01g28690DBnaC01g28690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9G8]

Coordinates

chrLK032329:+:242042..244323

Molecular Weight (calculated)

44733.5 Da

IEP (calculated)

5.394

GRAVY (calculated)

-0.364

Length

399 amino acids

Sequence
(BLAST)

001: MTTKGEKRIV SEEDKIFAKN FNIMDHPDIP TGLPPHLQLQ RTRVLCKNDA PIHTASVSYS GAYNAVGVDN SVKLENFSEN FKVDVIEISK DGMELTFDMI
101: GIDAAIANAF RRILLAELPT MAFEKVFIAN NTSIVQDEVL AQRMGLVPIA ADPKLFEYLS ENDQPNEKNT IVFKLHAKCA KGEGRKKVLT EQLIWLPNGS
201: ELVKESGDSN SKPKTYTSFS RSQKESFPEF ADNPITPSYP DILIAKLGPG HEIELEAHAV KGIGKTHAKW SPVATAWYRM LPEVILLGEV EDEDAERLVK
301: ACPENVFDIE DMGNGRKRAT VARPRDCTLC RQCVRQNYGE EVNKGVEEKE WIENVSLRRV KNHFIFKIES TGSLPPDVLF TEAVKILEDK CERVIANLS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.