Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY37227 | Canola | nucleus | 94.65 | 93.77 |
AT2G15430.1 | Thale cress | nucleus | 93.4 | 93.1 |
CDY36631 | Canola | nucleus | 93.08 | 92.79 |
CDX71219 | Canola | nucleus | 77.36 | 87.23 |
AT2G15400.1 | Thale cress | nucleus | 84.91 | 84.64 |
VIT_03s0180g00050.t01 | Wine grape | nucleus | 83.33 | 83.33 |
KRH50412 | Soybean | nucleus | 83.33 | 83.07 |
KRG89365 | Soybean | nucleus | 82.7 | 82.19 |
Solyc05g010300.2.1 | Tomato | nucleus | 79.25 | 79.0 |
TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 72.64 | 73.1 |
TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 71.7 | 72.38 |
TraesCS7D01G509400.1 | Wheat | nucleus | 71.07 | 71.75 |
Os09t0110400-02 | Rice | nucleus | 73.9 | 71.21 |
GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 72.96 | 70.3 |
EER98576 | Sorghum | nucleus | 72.33 | 70.12 |
TraesCS5B01G158300.1 | Wheat | nucleus | 72.64 | 69.79 |
TraesCS5A01G160900.1 | Wheat | plastid | 72.64 | 69.79 |
HORVU7Hr1G115770.2 | Barley | nucleus | 35.85 | 67.46 |
Zm00001d005295_P001 | Maize | extracellular | 72.01 | 65.43 |
TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 72.64 | 63.64 |
GSMUA_Achr3P13120_001 | Banana | cytosol | 27.67 | 62.86 |
HORVU5Hr1G050250.6 | Barley | nucleus | 71.7 | 61.79 |
CDX71220 | Canola | nucleus | 82.39 | 59.01 |
GSMUA_Achr3P13130_001 | Banana | cytosol | 12.89 | 35.65 |
CDY40501 | Canola | cytosol | 26.73 | 22.37 |
CDY54765 | Canola | cytosol | 26.1 | 21.73 |
CDY24544 | Canola | cytosol | 24.84 | 19.8 |
CDY34129 | Canola | cytosol | 24.53 | 19.55 |
Protein Annotations
KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | GO:A0A078JAD9 |
UniProt:A0A078JAD9 | EnsemblPlants:CDY62312 | ProteinID:CDY62312 | ProteinID:CDY62312.1 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 |
InterPro:DNA-dir_RNA_pol_insert | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00036157001 | InterPro:IPR036603 |
InterPro:IPR036643 | PFAM:PF01000 | PFAM:PF01193 | ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 |
InterPro:RBP11-like | InterPro:RNApol_insert_sf | SMART:SM00662 | SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI0004EE8A36 |
Description
BnaCnng39910DBnaCnng39910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAD9]
Coordinates
chrLK034129:+:10791..12117
Molecular Weight (calculated)
35438.1 Da
IEP (calculated)
4.392
GRAVY (calculated)
-0.240
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTGATYQRF PKVKIRELKD DYAKFELRDT DVSMANALRR VMISEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMSMRFSRD CDACDGDGQC
101: EFCSVEFHLR AKCVTDQTLD VTSRDLYSAD ATVTPVDFGV DSSDSGEQRG IIIVKLRRGQ ELKLRAIARK GIGKDHAKWS PAATVTFMYE PDIIINEDMM
201: DTLTDEEKID LIESSPTKVF DFDSVTRQVV VVDPEAYTYD EEVIKKAEAM GKVGLIEIRP KDDSFIFTVE STGAVKASQL VLNAIDLLKQ KLDAVRLSDD
301: TVEADDQFGE LGAHMRGG
101: EFCSVEFHLR AKCVTDQTLD VTSRDLYSAD ATVTPVDFGV DSSDSGEQRG IIIVKLRRGQ ELKLRAIARK GIGKDHAKWS PAATVTFMYE PDIIINEDMM
201: DTLTDEEKID LIESSPTKVF DFDSVTRQVV VVDPEAYTYD EEVIKKAEAM GKVGLIEIRP KDDSFIFTVE STGAVKASQL VLNAIDLLKQ KLDAVRLSDD
301: TVEADDQFGE LGAHMRGG
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.