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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37227 Canola nucleus 94.65 93.77
AT2G15430.1 Thale cress nucleus 93.4 93.1
CDY36631 Canola nucleus 93.08 92.79
CDX71219 Canola nucleus 77.36 87.23
AT2G15400.1 Thale cress nucleus 84.91 84.64
VIT_03s0180g00050.t01 Wine grape nucleus 83.33 83.33
KRH50412 Soybean nucleus 83.33 83.07
KRG89365 Soybean nucleus 82.7 82.19
Solyc05g010300.2.1 Tomato nucleus 79.25 79.0
TraesCS7A01G519700.1 Wheat mitochondrion, nucleus 72.64 73.1
TraesCS7B01G435800.1 Wheat mitochondrion, nucleus 71.7 72.38
TraesCS7D01G509400.1 Wheat nucleus 71.07 71.75
Os09t0110400-02 Rice nucleus 73.9 71.21
GSMUA_Achr1P26120_001 Banana mitochondrion, nucleus 72.96 70.3
EER98576 Sorghum nucleus 72.33 70.12
TraesCS5B01G158300.1 Wheat nucleus 72.64 69.79
TraesCS5A01G160900.1 Wheat plastid 72.64 69.79
HORVU7Hr1G115770.2 Barley nucleus 35.85 67.46
Zm00001d005295_P001 Maize extracellular 72.01 65.43
TraesCS5D01G165800.2 Wheat mitochondrion, nucleus 72.64 63.64
GSMUA_Achr3P13120_001 Banana cytosol 27.67 62.86
HORVU5Hr1G050250.6 Barley nucleus 71.7 61.79
CDX71220 Canola nucleus 82.39 59.01
GSMUA_Achr3P13130_001 Banana cytosol 12.89 35.65
CDY40501 Canola cytosol 26.73 22.37
CDY54765 Canola cytosol 26.1 21.73
CDY24544 Canola cytosol 24.84 19.8
CDY34129 Canola cytosol 24.53 19.55
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6MapMan:15.1.6.1Gene3D:2.170.120.12Gene3D:3.30.1360.270GO:A0A078JAD9
UniProt:A0A078JAD9EnsemblPlants:CDY62312ProteinID:CDY62312ProteinID:CDY62312.1InterPro:DNA-dir_RNA_pol_30-40kDasu_CSInterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3
InterPro:DNA-dir_RNA_pol_insertGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899
GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006351GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00036157001InterPro:IPR036603
InterPro:IPR036643PFAM:PF01000PFAM:PF01193ScanProsite:PS00446PANTHER:PTHR11800PANTHER:PTHR11800:SF2
InterPro:RBP11-likeInterPro:RNApol_insert_sfSMART:SM00662SUPFAM:SSF55257SUPFAM:SSF56553UniParc:UPI0004EE8A36
Description
BnaCnng39910DBnaCnng39910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAD9]
Coordinates
chrLK034129:+:10791..12117
Molecular Weight (calculated)
35438.1 Da
IEP (calculated)
4.392
GRAVY (calculated)
-0.240
Length
318 amino acids
Sequence
(BLAST)
001: MDTGATYQRF PKVKIRELKD DYAKFELRDT DVSMANALRR VMISEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMSMRFSRD CDACDGDGQC
101: EFCSVEFHLR AKCVTDQTLD VTSRDLYSAD ATVTPVDFGV DSSDSGEQRG IIIVKLRRGQ ELKLRAIARK GIGKDHAKWS PAATVTFMYE PDIIINEDMM
201: DTLTDEEKID LIESSPTKVF DFDSVTRQVV VVDPEAYTYD EEVIKKAEAM GKVGLIEIRP KDDSFIFTVE STGAVKASQL VLNAIDLLKQ KLDAVRLSDD
301: TVEADDQFGE LGAHMRGG
Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.