Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G011350.4 | |
| HORVU2Hr1G011400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G15400.1 | HORVU2Hr1G011350.4 | AT1G10270.1 | 16489121 |
| AT2G15400.1 | HORVU2Hr1G011400.1 | AT1G10270.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G160900.1 | Wheat | plastid | 87.8 | 97.89 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 87.53 | 97.58 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 87.8 | 89.26 |
| Os09t0110400-02 | Rice | nucleus | 77.51 | 86.67 |
| EER98576 | Sorghum | nucleus | 73.98 | 83.23 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 37.13 | 81.07 |
| Zm00001d005295_P001 | Maize | extracellular | 73.71 | 77.71 |
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 64.23 | 74.53 |
| KRH50412 | Soybean | nucleus | 63.69 | 73.67 |
| KRG89365 | Soybean | nucleus | 63.41 | 73.12 |
| GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 64.5 | 72.12 |
| CDY62312 | Canola | nucleus | 61.79 | 71.7 |
| CDY37227 | Canola | nucleus | 62.33 | 71.65 |
| Bra039839.1-P | Field mustard | nucleus | 62.33 | 71.65 |
| CDY36631 | Canola | nucleus | 61.79 | 71.47 |
| Bra015218.1-P | Field mustard | nucleus | 61.79 | 71.47 |
| Solyc05g010300.2.1 | Tomato | nucleus | 61.25 | 70.85 |
| AT2G15430.1 | Thale cress | nucleus | 60.7 | 70.22 |
| CDX71219 | Canola | nucleus | 53.66 | 70.21 |
| AT2G15400.1 | Thale cress | nucleus | 57.18 | 66.14 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 22.76 | 60.0 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 14.91 | 47.83 |
| CDX71220 | Canola | nucleus | 55.56 | 46.17 |
| HORVU1Hr1G057510.1 | Barley | nucleus, plastid | 24.39 | 22.33 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | UniProt:A0A287R628 |
| InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 |
| EnsemblPlantsGene:HORVU5Hr1G050250 | EnsemblPlants:HORVU5Hr1G050250.6 | InterPro:IPR036603 | InterPro:IPR036643 | PFAM:PF01000 | PFAM:PF01193 |
| ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 | InterPro:RBP11-like | InterPro:RNApol_insert_sf | SMART:SM00662 |
| SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI000B477D7D | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:+:389479948..389488439
Molecular Weight (calculated)
40809.4 Da
IEP (calculated)
4.857
GRAVY (calculated)
-0.380
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: KAPSSTLLLS LLRFPQIRRP TQQNPCGGDP PHLRRPGGME RSAAGASYQR FPRVRIRELK DEYAKFELKD TDASMANALR RVMIAEVPTV AIDLVEIESN
101: SSVLNDEFLA HRLGLIPLTS SGAMSMRFSR DCDACDGDGS CEHCSVEFHL AARATDSGQT LEVTSTKDLR STDPKVCPVD QQREYQQALG NVDAYEPDAA
201: GDHRGILIVK LRRGQELRLR AIARKGIGKD HAKWSPAATV TFMYEPDIRI NQELMETLTL EEKQSWVESS PTKVFDIDPV TQQVTIVDAE AYTYDDEVIK
301: KAEAMGKPGL VEINAKEDSF VFTVETTGAI TAYELIMNAI TVLRQKLDAV RLQDDDGDLL DLGAHLTGG
101: SSVLNDEFLA HRLGLIPLTS SGAMSMRFSR DCDACDGDGS CEHCSVEFHL AARATDSGQT LEVTSTKDLR STDPKVCPVD QQREYQQALG NVDAYEPDAA
201: GDHRGILIVK LRRGQELRLR AIARKGIGKD HAKWSPAATV TFMYEPDIRI NQELMETLTL EEKQSWVESS PTKVFDIDPV TQQVTIVDAE AYTYDDEVIK
301: KAEAMGKPGL VEINAKEDSF VFTVETTGAI TAYELIMNAI TVLRQKLDAV RLQDDDGDLL DLGAHLTGG
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.