Factsheet for HORVU7Hr1G115770.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G011350.4
HORVU2Hr1G011400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	HORVU2Hr1G011350.4	AT1G10270.1	16489121
AT2G15400.1	HORVU2Hr1G011400.1	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13120_001	Banana	cytosol	39.65	47.86
TraesCS7D01G509400.1	Wheat	nucleus	86.39	46.35
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	85.21	45.57
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	82.84	44.44
Os09t0110400-02	Rice	nucleus	81.66	41.82
EER98576	Sorghum	nucleus	79.29	40.85
CDX71219	Canola	nucleus	66.27	39.72
Zm00001d005295_P001	Maize	extracellular	78.11	37.71
HORVU5Hr1G050250.6	Barley	nucleus	81.07	37.13
CDY62312	Canola	nucleus	67.46	35.85
KRH50412	Soybean	nucleus	67.46	35.74
VIT_03s0180g00050.t01	Wine grape	nucleus	66.86	35.53
CDY37227	Canola	nucleus	67.46	35.51
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	69.23	35.45
CDY36631	Canola	nucleus	66.86	35.42
Bra015218.1-P	Field mustard	nucleus	66.86	35.42
KRG89365	Soybean	nucleus	66.86	35.31
Bra039839.1-P	Field mustard	nucleus	66.86	35.2
AT2G15430.1	Thale cress	nucleus	65.68	34.8
Solyc05g010300.2.1	Tomato	nucleus	62.13	32.92
AT2G15400.1	Thale cress	nucleus	58.58	31.03
CDX71220	Canola	nucleus	66.86	25.45
HORVU1Hr1G057510.1	Barley	nucleus, plastid	25.44	10.67
GSMUA_Achr3P13130_001	Banana	cytosol	1.78	2.61

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.10	MapMan:35.1	UniProt:A0A287XWN1
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983
EnsemblPlantsGene:HORVU7Hr1G115770	EnsemblPlants:HORVU7Hr1G115770.2	InterPro:IPR036603	InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193
ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2	InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662
SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI000B475AD5	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:642230336..642237838

Molecular Weight (calculated)

18618.9 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.189

Length

169 amino acids

Sequence
(BLAST)

001: MERPAAGISY QRFPRVRIRE LKDEYAKFEL RDTDASMANA LRRVMIAEVP TVAIDLVEIE SNSSVLNDEF IAHRLGLIPL TSSAAMSMRL SRDCDACDGD
101: GSCEYCSVEF HLAARATESG QTLEVTAQDL RSTDPKVCPV DQADAASDHS VQIVNTYVGH TTLSVTWAY

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.