Factsheet for TraesCS7D01G509400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G063500.1
TraesCS2A01G524300.1
TraesCS2B01G076200.1
TraesCS2B01G554300.1
TraesCS2D01G061700.1
TraesCS2D01G527300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	TraesCS2A01G063500.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2A01G524300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G076200.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G554300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G061700.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G527300.1	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	96.51	96.2
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	94.92	94.92
HORVU7Hr1G115770.2	Barley	nucleus	46.35	86.39
Os09t0110400-02	Rice	nucleus	87.3	83.33
EER98576	Sorghum	nucleus	83.49	80.18
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	90.48	78.51
Zm00001d005295_P001	Maize	extracellular	82.86	74.57
VIT_03s0180g00050.t01	Wine grape	nucleus	73.97	73.27
KRH50412	Soybean	nucleus	73.97	73.04
KRG89365	Soybean	nucleus	73.65	72.5
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	74.92	71.52
CDY62312	Canola	nucleus	71.75	71.07
CDY36631	Canola	nucleus	71.11	70.22
Bra015218.1-P	Field mustard	nucleus	71.11	70.22
Bra039839.1-P	Field mustard	nucleus	71.43	70.09
Solyc05g010300.2.1	Tomato	nucleus	70.79	69.91
AT2G15430.1	Thale cress	nucleus	70.79	69.91
CDX71219	Canola	nucleus	62.54	69.86
CDY37227	Canola	nucleus	71.11	69.78
AT2G15400.1	Thale cress	nucleus	66.98	66.14
GSMUA_Achr3P13120_001	Banana	cytosol	26.67	60.0
GSMUA_Achr3P13130_001	Banana	cytosol	17.46	47.83
CDX71220	Canola	nucleus	64.44	45.72
TraesCS1D01G238500.1	Wheat	cytosol	26.35	23.38

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS
InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603
InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2
InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	EnsemblPlantsGene:TraesCS7D01G509400
EnsemblPlants:TraesCS7D01G509400.1	TIGR:cd07031	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:612894025..612898614

Molecular Weight (calculated)

34746.3 Da

IEP (calculated)

4.366

GRAVY (calculated)

-0.151

Length

315 amino acids

Sequence
(BLAST)

001: MERPAAGASY QRFPRVRIRE LRDEYAKFEL RDTDASVANA LRRVMIAEVP TVAIDLVEIE ANSSVLTDEF IAHRLGLIPL TSSAAMAMRL SRDCDACDGD
101: GSCEYCSVEF HLAARATDSG QTLEVTAMDL RSTDPKVCPV DQADAAGDHR GILIVKLRCG QELRLRAIAR KGIGKDHAKW SPAATVTFMY EPDICINEEL
201: METLTLEEKQ SWVESSPTKV FDIDPVTQQV TIVDLEAYTY DDEVIKKAEA MGKPGLVEIN AKEDSFVFTV ETTGAITAYE LIMNAITILR QKLDAIRLQD
301: DDGDLAELDA HLVGG

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.