Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 71.43 | 87.06 |
| TraesCS2D01G527300.1 | Wheat | mitochondrion | 72.82 | 85.95 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 67.96 | 67.55 |
| Os05t0365500-01 | Rice | nucleus | 55.56 | 61.47 |
| OQU78362 | Sorghum | cytosol | 38.19 | 56.2 |
| Zm00001d032900_P001 | Maize | mitochondrion | 44.84 | 55.6 |
| OQU93028 | Sorghum | mitochondrion | 46.53 | 53.6 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 31.55 | 51.46 |
| VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 28.77 | 46.25 |
| KRH26275 | Soybean | mitochondrion | 31.05 | 39.52 |
| KRH06034 | Soybean | mitochondrion | 31.55 | 36.76 |
| CDY31037 | Canola | mitochondrion | 28.97 | 36.18 |
| Bra018451.1-P | Field mustard | mitochondrion | 28.87 | 36.06 |
| CDY20645 | Canola | mitochondrion | 29.17 | 35.81 |
| CDY25066 | Canola | cytosol | 4.56 | 35.66 |
| CDX93444 | Canola | mitochondrion | 26.49 | 35.09 |
| Bra019952.1-P | Field mustard | mitochondrion | 28.08 | 34.55 |
| CDY34898 | Canola | mitochondrion | 29.27 | 34.54 |
| Bra031706.1-P | Field mustard | mitochondrion | 29.07 | 34.31 |
| CDY21873 | Canola | cytosol | 3.67 | 34.26 |
| CDX94912 | Canola | mitochondrion | 27.68 | 33.7 |
| AT1G10270.1 | Thale cress | mitochondrion | 29.46 | 32.53 |
| CDY65945 | Canola | cytosol | 21.83 | 32.4 |
| Solyc01g103160.2.1 | Tomato | nucleus | 30.46 | 31.52 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 11.41 | 30.5 |
| PGSC0003DMT400064089 | Potato | mitochondrion, plastid | 30.75 | 29.92 |
| CDY53878 | Canola | mitochondrion | 3.97 | 27.78 |
| TraesCS3B01G244700.1 | Wheat | cytosol | 16.87 | 25.26 |
| TraesCS1B01G369200.1 | Wheat | mitochondrion | 14.98 | 23.48 |
| CDY25062 | Canola | mitochondrion | 7.44 | 20.66 |
| CDY33104 | Canola | mitochondrion | 7.44 | 20.38 |
| AT3G60960.1 | Thale cress | mitochondrion | 8.13 | 20.35 |
| CDX95653 | Canola | mitochondrion | 7.74 | 19.45 |
| AT3G60980.1 | Thale cress | mitochondrion | 7.94 | 19.42 |
| CDY37773 | Canola | mitochondrion | 7.94 | 18.82 |
| CDX80067 | Canola | mitochondrion | 7.84 | 18.16 |
| CDY10671 | Canola | mitochondrion | 7.14 | 18.05 |
| Bra004488.1-P | Field mustard | cytosol | 7.34 | 18.0 |
| CDX95410 | Canola | cytosol | 0.89 | 17.31 |
| AT5G28380.1 | Thale cress | cytosol | 6.55 | 16.92 |
| AT5G28340.1 | Thale cress | cytosol | 6.85 | 15.86 |
| Bra000388.1-P | Field mustard | cytosol | 4.66 | 15.16 |
| CDX71714 | Canola | cytosol | 3.27 | 13.58 |
| Bra004487.1-P | Field mustard | mitochondrion | 7.04 | 13.42 |
| CDX80068 | Canola | mitochondrion | 7.04 | 13.42 |
| CDY37774 | Canola | mitochondrion | 6.65 | 12.18 |
| CDY53879 | Canola | cytosol | 0.89 | 5.0 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G554300.1 | EnsemblPlantsGene:TraesCS2B01G554300 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF48452 |
| TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:749418567..749421623
Molecular Weight (calculated)
110467.0 Da
IEP (calculated)
7.491
GRAVY (calculated)
-0.740
Length
1008 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAPYRRLLL LRRLSISISH SHLAPHPQPS PLLPPARHFA FSSAEEAAAE RRRRKRRLRI EPPLHALRRD PSTPPPPRDP NAPRLPDTTS SLVGPRLSLH
0101: NRVQALIRSG DLDGAAAASR AAVSSRVRPT VFTCNAVAAS MVRAGRPDDA VALFAFFFRR SNIVPNVVSY NTLILAHCDA ARVDEALQAY QEMLDGVTSF
0201: SPSAVSYRHL TKGLVAAGRV QDALDLLRDM LNRGQGADSI VYKNLIDGYV ALDDWDKAFQ LFDELREKAT VYDGVVHTSF MEGYWKKGMD KEAMDSYSSL
0301: LDKKFKMTPA TCNVLLQTLF SHDKHKEAHE LWETMFDNHS PPSFIGVNSE SYTVMVNQCF KEGRFQDAIE VFHRQPSKTV QMDVACFNNI IGKLCENGML
0401: AEAEQLFEEM ESKSVLPDVY TYTYLVDSCF KDGRVDDTMQ YFHKMADGRE HGPKFNIAFF DRMFQGLTVA GRIDDALKVY GRMPDKEIKP STATFEILVK
0501: ASCKEGELDR ARDLVRDMAR GGVVAPPEFR ECIVEIFKTA DRQEEIEQAF DEKPVPPPPS PRPEYRPRSL PGFASNQMPG SYAPNQGKLG YGSPQPFHHG
0601: NAVPQILRPE GMSSEPRQPA FGSQQVQKTE VGASNTSQYG IPSPQGSPPG TSLPQGHPPD FGSSRPWQQA VGASQVQQPK FSSDSPVQSG FGTPQPQQST
0701: HIAHQTQHAG FGTPRPWQTG FGSQQAQQPG YGSQQAQQPG YGSQQAQQPG YGSHQTQQFG YGSQQAQQPG YGSQQGQQPG YGSQQVQQPG YVSHQTQQPR
0801: YGSQQAQQPG YGSQQAQQPG YGSQQAQQPG YGSHQAQQTG YGSHQAQQPG YSYQAQQPKY GAHQAEQPGY GAYQAQQPGY GAHQARQPGY GAPQRSQPPF
0901: GLPEAPQSGV GSARTLPTYG NIGNQHDQFG SPPQGGQKVD TQPAQDSGAP EAPQSGSGIA QSLPNSGHIG NQHDQFGSGG IKFSTQSPQE DFGTQASHEV
1001: AVKYAERY
0101: NRVQALIRSG DLDGAAAASR AAVSSRVRPT VFTCNAVAAS MVRAGRPDDA VALFAFFFRR SNIVPNVVSY NTLILAHCDA ARVDEALQAY QEMLDGVTSF
0201: SPSAVSYRHL TKGLVAAGRV QDALDLLRDM LNRGQGADSI VYKNLIDGYV ALDDWDKAFQ LFDELREKAT VYDGVVHTSF MEGYWKKGMD KEAMDSYSSL
0301: LDKKFKMTPA TCNVLLQTLF SHDKHKEAHE LWETMFDNHS PPSFIGVNSE SYTVMVNQCF KEGRFQDAIE VFHRQPSKTV QMDVACFNNI IGKLCENGML
0401: AEAEQLFEEM ESKSVLPDVY TYTYLVDSCF KDGRVDDTMQ YFHKMADGRE HGPKFNIAFF DRMFQGLTVA GRIDDALKVY GRMPDKEIKP STATFEILVK
0501: ASCKEGELDR ARDLVRDMAR GGVVAPPEFR ECIVEIFKTA DRQEEIEQAF DEKPVPPPPS PRPEYRPRSL PGFASNQMPG SYAPNQGKLG YGSPQPFHHG
0601: NAVPQILRPE GMSSEPRQPA FGSQQVQKTE VGASNTSQYG IPSPQGSPPG TSLPQGHPPD FGSSRPWQQA VGASQVQQPK FSSDSPVQSG FGTPQPQQST
0701: HIAHQTQHAG FGTPRPWQTG FGSQQAQQPG YGSQQAQQPG YGSQQAQQPG YGSHQTQQFG YGSQQAQQPG YGSQQGQQPG YGSQQVQQPG YVSHQTQQPR
0801: YGSQQAQQPG YGSQQAQQPG YGSQQAQQPG YGSHQAQQTG YGSHQAQQPG YSYQAQQPKY GAHQAEQPGY GAYQAQQPGY GAHQARQPGY GAPQRSQPPF
0901: GLPEAPQSGV GSARTLPTYG NIGNQHDQFG SPPQGGQKVD TQPAQDSGAP EAPQSGSGIA QSLPNSGHIG NQHDQFGSGG IKFSTQSPQE DFGTQASHEV
1001: AVKYAERY
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.