Factsheet for Bra000388.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95653	Canola	mitochondrion	94.84	73.32
Bra004488.1-P	Field mustard	cytosol	31.94	24.09
Bra004487.1-P	Field mustard	mitochondrion	27.42	16.07
GSMUA_Achr10P...	Banana	mitochondrion, plastid	16.45	8.25
Bra031706.1-P	Field mustard	mitochondrion	20.65	7.49
Bra019952.1-P	Field mustard	mitochondrion	18.71	7.08
Bra018451.1-P	Field mustard	mitochondrion	18.39	7.06
OQU78362	Sorghum	cytosol	14.52	6.57
Zm00001d032900_P001	Maize	mitochondrion	15.16	5.78
TraesCS2A01G524300.1	Wheat	mitochondrion	14.52	5.44
TraesCS2D01G527300.1	Wheat	mitochondrion	14.84	5.39
OQU93028	Sorghum	mitochondrion	15.16	5.37
HORVU2Hr1G011400.1	Barley	cytosol	13.55	5.24
Os05t0365500-01	Rice	nucleus	15.16	5.16
TraesCS2D01G061700.1	Wheat	golgi	15.81	5.16
TraesCS2A01G063500.1	Wheat	mitochondrion	15.48	5.11
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	15.81	4.83
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	13.23	4.69
TraesCS2B01G554300.1	Wheat	nucleus	15.16	4.66
Bra019587.1-P	Field mustard	cytosol	6.13	3.38
Bra029944.1-P	Field mustard	mitochondrion, plastid	6.45	3.1
Bra017999.1-P	Field mustard	cytosol	5.16	2.84

Protein Annotations

EnsemblPlants:Bra000388.1	EnsemblPlants:Bra000388.1-P	EnsemblPlantsGene:Bra000388	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	PFAM:PF01535	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI000253FE43	UniProt:M4C860	MapMan:35.1	:	:	:

Description

AT1G10270 (E=5e-052) GRP23 | GRP23 (GLUTAMINE-RICH PROTEIN23); binding

Coordinates

chrA03:+:10871704..10872636

Molecular Weight (calculated)

35727.1 Da

IEP (calculated)

5.808

GRAVY (calculated)

-0.181

Length

310 amino acids

Sequence
(BLAST)

001: MRSDRRYSDA YDLFHYYAAN SKWDLITNRC SGPIIIALCD EGKLDEDLEL YKHFLLRARP SYRAQLALAQ GLVDAGRIDE AVDKFYCVNR SVYGIFIRGF
101: LDLGNLERAN QLFQELKLSD DSDSVVQASA MFMEHWFKQE MDEKAMECYL SSKEEFSKIY ATAANALLKV LLRYGKKTEA CLLFGQMMEK DWSLRMSDSE
201: SCNIMVNECF KLGKISEAVE IFHKSVGTVS YPQLCYRNLI TKFCEQDLLS EAEQFFAEMC SKKFFLPDVL TYRTMMDAYV KKGRVSDAVK TVNQTLDASL
301: TYIAKKVLLM

Best Arabidopsis Sequence Match ( AT3G60960.2 )
(BLAST)

001: MSLLRRIVRN STVSKAVPVA KAFMPYPLGR DPSSLPKLDP VSISYIDSRP ISLRYRVRAM IEMSNLDEAS KLSRLAVLNG FLVDRDTVFI CNSVIGAMCS
101: AKRYDDAISL FNYFFNESQT LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC VLARSMSCCS FMVYDILIRG
201: FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
301: ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH
401: QAP

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178V6P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.