Factsheet for Os05t0365500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0110400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	Os09t0110400-02	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G524300.1	Wheat	mitochondrion	57.63	63.48
TraesCS2D01G061700.1	Wheat	golgi	64.43	61.79
TraesCS2A01G063500.1	Wheat	mitochondrion	63.34	61.45
Zm00001d032900_P001	Maize	mitochondrion	52.91	59.29
GSMUA_Achr10P...	Banana	mitochondrion, plastid	38.97	57.44
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	63.89	57.4
TraesCS2D01G527300.1	Wheat	mitochondrion	53.68	57.26
OQU78362	Sorghum	cytosol	43.03	57.23
OQU93028	Sorghum	mitochondrion	54.34	56.57
TraesCS2B01G554300.1	Wheat	nucleus	61.47	55.56
HORVU2Hr1G011400.1	Barley	cytosol	46.87	53.31
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	49.51	51.6
VIT_12s0035g01700.t01	Wine grape	mitochondrion	34.58	50.24
KRH26275	Soybean	mitochondrion	34.58	39.77
CDY31037	Canola	mitochondrion	33.37	37.67
KRH06034	Soybean	mitochondrion	35.68	37.57
Bra018451.1-P	Field mustard	mitochondrion	33.26	37.55
CDY20645	Canola	mitochondrion	32.49	36.05
CDX93444	Canola	mitochondrion	30.08	36.01
CDY25066	Canola	cytosol	5.05	35.66
CDY34898	Canola	mitochondrion	32.82	35.01
Bra019952.1-P	Field mustard	mitochondrion	31.28	34.8
Bra031706.1-P	Field mustard	mitochondrion	32.6	34.78
CDX94912	Canola	mitochondrion	31.17	34.3
AT1G10270.1	Thale cress	mitochondrion	33.7	33.63
Solyc01g103160.2.1	Tomato	nucleus	35.02	32.75
CDY09648	Canola	extracellular, mitochondrion, plastid	13.39	32.36
CDY65945	Canola	cytosol	23.71	31.81
CDY21873	Canola	cytosol	3.73	31.48
PGSC0003DMT400064089	Potato	mitochondrion, plastid	35.46	31.18
CDY53878	Canola	mitochondrion	4.39	27.78
Os11t0433600-01	Rice	nucleus	12.51	23.41
Os05t0534000-01	Rice	cytosol	7.14	22.57
AT3G60960.1	Thale cress	mitochondrion	9.55	21.59
CDY25062	Canola	mitochondrion	8.01	20.11
CDY33104	Canola	mitochondrion	8.01	19.84
CDY37773	Canola	mitochondrion	9.0	19.29
AT3G60980.1	Thale cress	mitochondrion	8.67	19.17
CDX95653	Canola	mitochondrion	8.34	18.95
CDX80067	Canola	mitochondrion	8.89	18.62
CDY10671	Canola	mitochondrion	8.01	18.3
Bra004488.1-P	Field mustard	cytosol	8.23	18.25
AT5G28380.1	Thale cress	cytosol	7.79	18.21
CDX95410	Canola	cytosol	0.99	17.31
AT5G28340.1	Thale cress	cytosol	8.12	17.01
Bra000388.1-P	Field mustard	cytosol	5.16	15.16
CDX71714	Canola	cytosol	3.95	14.81
CDX80068	Canola	mitochondrion	8.01	13.8
Bra004487.1-P	Field mustard	mitochondrion	8.01	13.8
CDY37774	Canola	mitochondrion	7.24	12.0
CDY53879	Canola	cytosol	0.99	5.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4338555	ProteinID:AAS79737.1	ProteinID:AAV31350.1	ProteinID:AAV32241.1
ProteinID:BAF17240.1	ProteinID:BAS93640.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlantsGene:Os05g0365500	EnsemblPlants:Os05t0365500-01	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF393	InterPro:Pentatricopeptide_repeat	UniProt:Q75IT2	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000351DAC	RefSeq:XP_015639291.1	SEG:seg	:	:

Description

Tetratricopeptide-like helical domain containing protein. (Os05t0365500-01)

Coordinates

chr5:+:17522715..17526483

Molecular Weight (calculated)

100824.0 Da

IEP (calculated)

8.028

GRAVY (calculated)

-0.675

Length

911 amino acids

Sequence
(BLAST)

001: MALYRRLLLL RRLSTLHPHP SLSSSSSSTA SPAAAASATH HLLPPHAPLA PHARGFAFSS AEEAAAERRR RKRRLRIEPP LHALRRDPSA PPPPRDPNAP
101: RLPDTTSALV GPRLSLHNRV QSLIRSGDLD GASVAARAAV TSRVRPTVFT CNAVAASMVR AGRHDDAVSL FDFFFRRSNI VPNVVSYNTL ILAHCEAARV
201: DSALQVYREM LDKAPFSPSA VTYRHLTKGL VAAGRIQDAL DLLREMLNRG QGADSLVYNN LIAGYIEEDN WDKAFELFEE LQGRCLVYDG VVHTSFMEGY
301: WKKGMDKEAM ENYQSLLDKK FRMTPATCNV LLETLFKHDK DKEANDLWET MIDNHTPPSF IGINSESYNV MVNQCFKKCK FHEAIEVFHR QPRKNVQMDV
401: GCFNNIIGKL CENGMLEEAE KLFEEMETKS VLPDVYTYTY LVDSCFKVGR VDDTIQYFYK MADGREHGPK FNIGFFNRMF EGLTEAGRMD DALKVYGRMP
501: DKEIKPNTTT FETLVNALCK EGDLDKAREL VSDMAKGGVT PPPEFRDSVI DIFKNAGRQE EIEKAFEEKP VPLPPQPRPE YRPRNSPQGL PGFASNQTRG
601: SYMPHQGQPT YGSQPLHPGV GGSQAIQPQG MPLRPQQPVF GGPQVDKSEF GGRPLQHGPS APDPRQPGVV SMTQPPNVST PNTWQHSGVH ATQGTHHGMG
701: SPRPWQQSVG IGQVQQTDYS SGPPMQPGFG HPQPPQPMHS APQTQQPGYG TSHPWHTGFN APQVQQPSYG GPQSSQHAVG STQPPQAQFG APQAPPPLPG
801: FHYQNRPEYG QAVDQHNRFG SPQGEPRFHT QPRQQGFDAQ APGNHALQGQ NSFNARRGQV GFGNQGAPPE YGASPSQPSH GAAWNQRGYG LSEDQEDVNQ
901: QVVPHAYARV R

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.