Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 5
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71714 | Canola | cytosol | 33.98 | 57.61 |
| CDY33104 | Canola | mitochondrion | 48.3 | 54.08 |
| CDY25062 | Canola | mitochondrion | 47.57 | 53.99 |
| AT3G60960.1 | Thale cress | mitochondrion | 30.34 | 31.02 |
| AT5G28380.1 | Thale cress | cytosol | 26.94 | 28.46 |
| AT5G28340.1 | Thale cress | cytosol | 27.43 | 25.98 |
| VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 20.87 | 13.72 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 20.15 | 13.43 |
| KRH26275 | Soybean | mitochondrion | 20.87 | 10.86 |
| AT1G10270.1 | Thale cress | mitochondrion | 22.57 | 10.19 |
| KRH06034 | Soybean | mitochondrion | 21.12 | 10.06 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 19.42 | 9.67 |
| TraesCS2D01G527300.1 | Wheat | mitochondrion | 19.66 | 9.48 |
| Zm00001d032900_P001 | Maize | mitochondrion | 18.69 | 9.47 |
| Solyc01g103160.2.1 | Tomato | nucleus | 22.09 | 9.34 |
| OQU93028 | Sorghum | mitochondrion | 19.66 | 9.26 |
| PGSC0003DMT400064089 | Potato | mitochondrion, plastid | 22.09 | 8.78 |
| Os05t0365500-01 | Rice | nucleus | 19.17 | 8.67 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 18.93 | 8.31 |
| TraesCS2D01G061700.1 | Wheat | golgi | 18.93 | 8.21 |
| OQU78362 | Sorghum | cytosol | 13.59 | 8.18 |
| TraesCS2B01G554300.1 | Wheat | nucleus | 19.42 | 7.94 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 19.17 | 7.79 |
| HORVU2Hr1G011400.1 | Barley | cytosol | 11.16 | 5.74 |
| AT3G49240.1 | Thale cress | cytosol, plastid | 8.5 | 5.56 |
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 11.16 | 5.26 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:825270 | ProteinID:AEE80134.1 | ArrayExpress:AT3G60980 | EnsemblPlantsGene:AT3G60980 |
| RefSeq:AT3G60980 | TAIR:AT3G60980 | RefSeq:AT3G60980-TAIR-G | EnsemblPlants:AT3G60980.1 | TAIR:AT3G60980.1 | EMBL:AY081333 |
| Unigene:At.74072 | EMBL:BT002139 | ProteinID:CAB94134.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006950 |
| GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_191657.1 | PFAM:PF01535 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF393 | InterPro:Pentatricopeptide_repeat | UniProt:Q9LEX5 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI00000AC607 | : | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At3g60980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LEX5]
Coordinates
chr3:-:22565309..22566773
Molecular Weight (calculated)
47370.8 Da
IEP (calculated)
7.834
GRAVY (calculated)
-0.308
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIGRLNLG RRFCTAVPRR SEDIMSNPDC RPSDLCLRVS YLIRCVGDLD TAAKYARLAV FTSIKSESTT TICQSIIGGM LRDKRLKDAY DLYEFFFNQH
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.