Factsheet for AT5G28380.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G28340.1	Thale cress	cytosol	81.54	73.1
AT3G60960.1	Thale cress	mitochondrion	58.46	56.58
CDY25066	Canola	cytosol	17.44	52.71
AT3G60980.1	Thale cress	mitochondrion	28.46	26.94
GSMUA_Achr10P...	Banana	mitochondrion, plastid	17.44	11.0
AT1G10270.1	Thale cress	mitochondrion	22.31	9.53
OQU78362	Sorghum	cytosol	14.1	8.03
TraesCS2A01G524300.1	Wheat	mitochondrion	16.67	7.86
Os05t0365500-01	Rice	nucleus	18.21	7.79
Zm00001d032900_P001	Maize	mitochondrion	16.15	7.75
TraesCS2D01G527300.1	Wheat	mitochondrion	16.92	7.73
OQU93028	Sorghum	mitochondrion	16.15	7.2
TraesCS2A01G063500.1	Wheat	mitochondrion	17.18	7.14
TraesCS2D01G061700.1	Wheat	golgi	17.18	7.05
HORVU2Hr1G011400.1	Barley	cytosol	13.59	6.62
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	17.18	6.61
TraesCS2B01G554300.1	Wheat	nucleus	16.92	6.55
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	13.08	5.84
AT3G49240.1	Thale cress	cytosol, plastid	7.44	4.61

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:832923	ProteinID:AED93794.1	ProteinID:ANM69518.1	ArrayExpress:AT5G28380
EnsemblPlantsGene:AT5G28380	RefSeq:AT5G28380	TAIR:AT5G28380	RefSeq:AT5G28380-TAIR-G	EnsemblPlants:AT5G28380.1	TAIR:AT5G28380.1
Unigene:At.66783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	RefSeq:NP_001331188.1	RefSeq:NP_198190.2	PFAM:PF01535	PFAM:PF12854	PO:PO:0001016
PO:PO:0001017	PO:PO:0025195	PO:PO:0025281	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
InterPro:Pentatricopeptide_repeat	UniProt:Q3E8X7	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000162639	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q3E8X7]

Coordinates

chr5:-:10338723..10341007

Molecular Weight (calculated)

43891.8 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.179

Length

390 amino acids

Sequence
(BLAST)

001: MGRVHAECDN ITNERFKHNN YYCPDCKIQH ELAPTILEEQ NSVFNASVVH VGQGSSHQVN GKGIQAAEPK SGSLVLIKGP TKQSFVGYDE AISLFDYFFN
101: ESQTLPNMLS CNLIIKAHCD QGSVDHALEL YRHILLDGSL APGIETYRIL TKALVGAKRL DEACDVVRSM SRCDFAVYDI LIRGFLDKGK FVRASQIFEE
201: LKGPNSKLPW RNYHKAIAIF NVSFMDYWFK QGKDEEAMEI FATLEHAELL NTISGNGVLK CLVEHGRKTE AWELFLDMIE ICDSETVGII MSKEGFFGEK
301: TIPFERVRRT CYTRMIASLC QQGNMLEAEK LFADMFADVD GDDLLAGPDV STFRAMINGY VKVGRVDDAI KTLNKMKISN LRKLSIHQAT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.