Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EER98576 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10270.1 | EER98576 | AT2G15400.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032900_P001 | Maize | mitochondrion | 62.48 | 52.64 |
| OQU93028 | Sorghum | mitochondrion | 60.58 | 47.43 |
| HORVU2Hr1G011400.1 | Barley | cytosol | 55.04 | 47.07 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 53.58 | 44.38 |
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 55.04 | 43.13 |
| Os05t0365500-01 | Rice | nucleus | 57.23 | 43.03 |
| TraesCS2D01G527300.1 | Wheat | mitochondrion | 52.55 | 42.15 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 56.2 | 41.0 |
| TraesCS2D01G061700.1 | Wheat | golgi | 56.35 | 40.63 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 36.5 | 40.45 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 57.52 | 38.86 |
| TraesCS2B01G554300.1 | Wheat | nucleus | 56.2 | 38.19 |
| VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 31.82 | 34.77 |
| CDY21873 | Canola | cytosol | 5.26 | 33.33 |
| CDY65945 | Canola | cytosol | 30.22 | 30.49 |
| KRH26275 | Soybean | mitochondrion | 33.28 | 28.79 |
| KRH06034 | Soybean | mitochondrion | 33.14 | 26.24 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 14.01 | 25.46 |
| CDY20645 | Canola | mitochondrion | 30.22 | 25.21 |
| Bra019952.1-P | Field mustard | mitochondrion | 29.64 | 24.79 |
| CDX93444 | Canola | mitochondrion | 27.3 | 24.57 |
| CDY31037 | Canola | mitochondrion | 28.91 | 24.54 |
| Bra018451.1-P | Field mustard | mitochondrion | 28.76 | 24.41 |
| CDX94912 | Canola | mitochondrion | 29.49 | 24.4 |
| CDY34898 | Canola | mitochondrion | 29.93 | 24.0 |
| Bra031706.1-P | Field mustard | mitochondrion | 29.78 | 23.89 |
| Solyc01g103160.2.1 | Tomato | nucleus | 31.97 | 22.48 |
| CDY25066 | Canola | cytosol | 4.23 | 22.48 |
| AT1G10270.1 | Thale cress | mitochondrion | 29.34 | 22.02 |
| PGSC0003DMT400064089 | Potato | mitochondrion, plastid | 31.53 | 20.85 |
| EES03220 | Sorghum | mitochondrion, plastid | 18.39 | 18.92 |
| Bra000388.1-P | Field mustard | cytosol | 6.57 | 14.52 |
| EES19865 | Sorghum | mitochondrion | 13.87 | 14.31 |
| AT5G28380.1 | Thale cress | cytosol | 8.03 | 14.1 |
| AT3G60980.1 | Thale cress | mitochondrion | 8.18 | 13.59 |
| CDX71714 | Canola | cytosol | 4.82 | 13.58 |
| CDY25062 | Canola | mitochondrion | 7.15 | 13.5 |
| CDX95410 | Canola | cytosol | 1.02 | 13.46 |
| CDY33104 | Canola | mitochondrion | 7.15 | 13.32 |
| Bra004488.1-P | Field mustard | cytosol | 7.59 | 12.65 |
| AT5G28340.1 | Thale cress | cytosol | 7.88 | 12.41 |
| CDY10671 | Canola | mitochondrion | 7.15 | 12.28 |
| CDY37773 | Canola | mitochondrion | 7.59 | 12.24 |
| AT3G60960.1 | Thale cress | mitochondrion | 7.15 | 12.16 |
| CDX95653 | Canola | mitochondrion | 7.01 | 11.97 |
| CDX80067 | Canola | mitochondrion | 7.59 | 11.95 |
| CDY53878 | Canola | mitochondrion | 2.34 | 11.11 |
| CDX80068 | Canola | mitochondrion | 6.28 | 8.13 |
| Bra004487.1-P | Field mustard | mitochondrion | 6.28 | 8.13 |
| CDY37774 | Canola | mitochondrion | 5.99 | 7.45 |
| CDY53879 | Canola | cytosol | 1.31 | 5.0 |
Protein Annotations
| EnsemblPlants:OQU78362 | EnsemblPlantsGene:SORBI_3009G213200 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:OQU78362 | ProteinID:OQU78362.1 | SEG:seg |
| SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | UniParc:UPI000B8BA59E | UniProt:A0A1Z5R3L7 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr9:-:55885958..55888169
Molecular Weight (calculated)
76667.8 Da
IEP (calculated)
6.212
GRAVY (calculated)
-0.620
Length
685 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRAARHDDA VALFDFFFRR SNIVPNIVSY NTLILAHCEA DRVDTAVQVY HDMLASAPFS PSAVTFRHLT KGLVAVGRIH DALDLLREML DRGAGADSLV
101: YNNLIAGYID LDDWGRAFEL FNELAERCLV YDGVVHTTFM EGYWRQGKDK EAMDNYQSLL DRGFKMTPAT CNVLLETLFK HGKHKEANDL WETMIDNHTP
201: PSFIGINAES YNVMVNQCFR EGKFKEAIEV FHRQPRKNVQ MDVGCFNNII GKLCENGMLG EAEKLFEEME KKSVLPDVHT YTYLVDSCFK EGRVEDTMGY
301: FYKMADGKQH GPKFNIGFFN RMFEGLTEAG RIDDALKVYG RMPDKEIKPN MTTFEILVKA LCKEEGDLDQ ARGLVMDMAR GSIVPPPEFR ESVVNFFKKA
401: GRQEEIEKAF EEKPMLTTQP RTEYLSRTEY HSRNAVGAAQ VKQPGFSSAP AAEPEFVYSQ PQQSTLSNTP NQQPEFGSSR SWNSGFGAPQ AQPGYGAPQP
501: VQAVAGSSQR PRTQFGASQG EPGYSNIGNQ HGQFGSPQRE PKYSNHPPQV GYGAQLPQSG YRFELQQEQV GIGNRVAQSA YVASSQPSYD TRWSSSGYGS
601: TQGQLGYGGP QAQSHESQLP HHQGNFGMPH IQNNNGFYRH NHGYMPSNGL QGFDAPHGDS GTAMSKDYQE TTTSEDRQQV TFLKA
101: YNNLIAGYID LDDWGRAFEL FNELAERCLV YDGVVHTTFM EGYWRQGKDK EAMDNYQSLL DRGFKMTPAT CNVLLETLFK HGKHKEANDL WETMIDNHTP
201: PSFIGINAES YNVMVNQCFR EGKFKEAIEV FHRQPRKNVQ MDVGCFNNII GKLCENGMLG EAEKLFEEME KKSVLPDVHT YTYLVDSCFK EGRVEDTMGY
301: FYKMADGKQH GPKFNIGFFN RMFEGLTEAG RIDDALKVYG RMPDKEIKPN MTTFEILVKA LCKEEGDLDQ ARGLVMDMAR GSIVPPPEFR ESVVNFFKKA
401: GRQEEIEKAF EEKPMLTTQP RTEYLSRTEY HSRNAVGAAQ VKQPGFSSAP AAEPEFVYSQ PQQSTLSNTP NQQPEFGSSR SWNSGFGAPQ AQPGYGAPQP
501: VQAVAGSSQR PRTQFGASQG EPGYSNIGNQ HGQFGSPQRE PKYSNHPPQV GYGAQLPQSG YRFELQQEQV GIGNRVAQSA YVASSQPSYD TRWSSSGYGS
601: TQGQLGYGGP QAQSHESQLP HHQGNFGMPH IQNNNGFYRH NHGYMPSNGL QGFDAPHGDS GTAMSKDYQE TTTSEDRQQV TFLKA
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.