Factsheet for TraesCS2B01G076200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus

Predictor Summary:

plastid 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 23128297
plastid: 24136528
nucleus: 26579155

msms PMID: 24136528 doi

A Nozawa, Y Tozawa

Cell-Free Science and Technology Research Center, Ehime University, Matsuyama, Ehime, Japan.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G160900.1
TraesCS5B01G158300.1
TraesCS5D01G165800.2
TraesCS7A01G519700.1
TraesCS7B01G435800.1
TraesCS7D01G509400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	TraesCS5A01G160900.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS5B01G158300.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS5D01G165800.2	AT2G15400.1	16489121
AT1G10270.1	TraesCS7A01G519700.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS7B01G435800.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS7D01G509400.1	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G063500.1	Wheat	mitochondrion	85.01	91.8
TraesCS2D01G061700.1	Wheat	golgi	85.21	90.95
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	70.61	81.92
HORVU2Hr1G011400.1	Barley	cytosol	63.41	80.27
TraesCS2B01G554300.1	Wheat	nucleus	67.55	67.96
Os05t0365500-01	Rice	nucleus	57.4	63.89
Zm00001d032900_P001	Maize	mitochondrion	46.35	57.81
OQU78362	Sorghum	cytosol	38.86	57.52
GSMUA_Achr10P...	Banana	mitochondrion, plastid	34.02	55.83
OQU93028	Sorghum	mitochondrion	47.83	55.43
VIT_12s0035g01700.t01	Wine grape	mitochondrion	29.19	47.21
KRH26275	Soybean	mitochondrion	30.18	38.64
KRH06034	Soybean	mitochondrion	31.36	36.76
CDY25066	Canola	cytosol	4.64	36.43
CDY31037	Canola	mitochondrion	28.99	36.43
Bra018451.1-P	Field mustard	mitochondrion	28.99	36.43
CDX93444	Canola	mitochondrion	26.73	35.61
CDY20645	Canola	mitochondrion	28.5	35.2
Bra019952.1-P	Field mustard	mitochondrion	28.21	34.92
CDY34898	Canola	mitochondrion	29.39	34.89
Bra031706.1-P	Field mustard	mitochondrion	29.19	34.66
CDX94912	Canola	mitochondrion	28.01	34.3
CDY21873	Canola	cytosol	3.55	33.33
AT1G10270.1	Thale cress	mitochondrion	29.68	32.97
Solyc01g103160.2.1	Tomato	nucleus	30.87	32.14
CDY09648	Canola	extracellular, mitochondrion, plastid	11.83	31.83
CDY65945	Canola	cytosol	20.91	31.22
PGSC0003DMT400064089	Potato	mitochondrion, plastid	30.97	30.31
CDY53878	Canola	mitochondrion	4.14	29.17
TraesCS3B01G244700.1	Wheat	cytosol	16.17	24.37
TraesCS1B01G369200.1	Wheat	mitochondrion	14.5	22.86
CDY25062	Canola	mitochondrion	7.4	20.66
AT3G60960.1	Thale cress	mitochondrion	8.19	20.6
CDY33104	Canola	mitochondrion	7.4	20.38
CDX95653	Canola	mitochondrion	7.79	19.7
AT3G60980.1	Thale cress	mitochondrion	7.79	19.17
CDY37773	Canola	mitochondrion	7.69	18.35
Bra004488.1-P	Field mustard	cytosol	7.4	18.25
CDX80067	Canola	mitochondrion	7.59	17.7
CDY10671	Canola	mitochondrion	6.9	17.54
CDX95410	Canola	cytosol	0.89	17.31
AT5G28380.1	Thale cress	cytosol	6.61	17.18
AT5G28340.1	Thale cress	cytosol	6.9	16.09
Bra000388.1-P	Field mustard	cytosol	4.83	15.81
CDX71714	Canola	cytosol	3.45	14.4
Bra004487.1-P	Field mustard	mitochondrion	7.2	13.8
CDX80068	Canola	mitochondrion	7.2	13.8
CDY37774	Canola	mitochondrion	6.71	12.36
CDY53879	Canola	cytosol	0.89	5.0

Protein Annotations

EnsemblPlants:TraesCS2B01G076200.1	EnsemblPlantsGene:TraesCS2B01G076200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:41144682..41148118

Molecular Weight (calculated)

111414.0 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.732

Length

1014 amino acids

Sequence
(BLAST)

0001: MAWRNGPSPP AEGFWVALLP PVAAAPPEPF PPLPCPAPRR RTTMAALLRR LLLLRRLALP HSQPQPRLLP HTTALTPHPA LAPSRGFSFS SAEEAAAERR
0101: RRKRRLRIEP PLHALRRDPS APPPPRDPNA PRLPDTTSSL VGPRLSLHNR VQSLIRSGDL DGASAAARAA VSSRVRPTVF TCNAVAASMG RAGRHDDAVA
0201: LFDFFFRRSG IVPNVVSYNT LILAHCEAGR VDEALQAYQE MLDGATSFSP SAVSYRHLTK GLVAAGRIQE ALELLHSMYH RGQGADSIVY RNLIDGYIGL
0301: DDWDKAFELF AELTEKATVY DGVVHTSFME GYWKKGMDKE AMENYKSLLD RNFKMTPATC NVLLETLFKH DKHKEANDLW ETMIDNHSPP SFIGMNSESY
0401: NVMVNQCFKE GRFQDAIEVF HRQPRRNVQM DVGCFNNIIG KLCEKGMLAE AEKLFEEMES KSVLPDVYTY TFLVDLCFKE GRVDDTIQYF YKMADGREHG
0501: PKFNIGFFNR MFEGLSQAGR IDDALKVYGR MADKEIKPNT TTFEILVNAL CKEGELDRAL DLVRDMARGG VVATPEFRVS VGEIFKNADR HEEIEKAFEE
0601: KPVPLPPQPR PEVRPRSSPQ GLPGFASNQT RGSYTPNQGQ PGYGSPQPFQ PGNGASQVRQ PEWMSPKLQQ PVSGNQQVEK TDVGASNKWQ HGISSPQEKQ
0701: PGIALPQDGQ QPEFGTSRPW QQTVGAPQVQ QPNFGSATPV QPGFGSRPQQ PPHGSHETQH SGFGTSRPWQ TGYGAHQAQQ PGHVAHQARQ PGYGAHQAQQ
0801: PGHGAHQAQQ PGYGAHQAQQ PGYGAHQAQQ PGYGAHQAQQ PGYGAHQAQQ PGYGAHQAQQ AGYGTHQAQQ AGYGTHQAQQ PGYGAQQAQQ PRYGANQVQQ
0901: PGYGAHQAQQ PGYEAHQAQQ PRYGAHQAQQ PGYGTHQAQQ PGYGAPQASR PSFGAPEAPR SSLGSAQSLP HYGRIGNEHD QLGSSRQGGP TFSTQAPQTA
1001: EAPDDMAVKY SQHY

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.