Factsheet for Bra004487.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80068	Canola	mitochondrion	100.0	100.0
Bra000388.1-P	Field mustard	cytosol	16.07	27.42
Bra004488.1-P	Field mustard	cytosol	20.04	25.79
GSMUA_Achr10P...	Banana	mitochondrion, plastid	15.31	13.11
Bra031706.1-P	Field mustard	mitochondrion	17.96	11.12
Bra019952.1-P	Field mustard	mitochondrion	17.01	10.99
Bra018451.1-P	Field mustard	mitochondrion	16.64	10.9
TraesCS2A01G524300.1	Wheat	mitochondrion	13.8	8.83
Zm00001d032900_P001	Maize	mitochondrion	13.42	8.73
TraesCS2D01G527300.1	Wheat	mitochondrion	13.42	8.31
OQU93028	Sorghum	mitochondrion	13.61	8.23
Os05t0365500-01	Rice	nucleus	13.8	8.01
TraesCS2D01G061700.1	Wheat	golgi	13.8	7.68
TraesCS2A01G063500.1	Wheat	mitochondrion	12.85	7.24
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	13.8	7.2
TraesCS2B01G554300.1	Wheat	nucleus	13.42	7.04
Bra019587.1-P	Field mustard	cytosol	6.99	6.58
Bra029944.1-P	Field mustard	mitochondrion, plastid	7.75	6.35
OQU78362	Sorghum	cytosol	8.13	6.28
Bra017999.1-P	Field mustard	cytosol	6.62	6.21
HORVU2Hr1G011400.1	Barley	cytosol	7.18	4.74
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	6.81	4.12

Protein Annotations

EnsemblPlants:Bra004487.1	EnsemblPlants:Bra004487.1-P	EnsemblPlantsGene:Bra004487	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	PFAM:PF01535	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI00025472C6
UniProt:M4CJV3	MapMan:35.1	:	:	:	:

Description

AT1G10270 (E=1e-037) GRP23 | GRP23 (GLUTAMINE-RICH PROTEIN23); binding

Coordinates

chrA05:-:389638..391227

Molecular Weight (calculated)

60639.9 Da

IEP (calculated)

7.649

GRAVY (calculated)

-0.237

Length

529 amino acids

Sequence
(BLAST)

001: MMMMLLRHRT LPKSPSLLSR HFSSQCEDEK SVYRRVRSLI GSSELDKAVE YARSPFVVKS RRATRSAICE LVVTALYDAK RYRELLSLIF KFSIRDRDPK
101: LYYGLNCLNL QSRAREKRNL ISYAKYEAEA KRLELNKCLV SNPPPYPIIL GGGGDVIISP PKNQYYDESH LYSTVKLLIQ NLSDLDTAVE YARFTAFTTT
201: RTETTTATCD LIIAALCEAK RYMDAYHLFH YFFNQSNISL SVDCCNHIVK ALCDDGHAHV ALQLHHHDDA PLDYQTYRIL TKALFLSGKI DEALDLVKDI
301: FSLNNPDKYD SVFLDQSDFD KAWALCCEEV ISSNNVGYPT VTKTAVTVSL IEYYFSKGED EKAMEIYTCL VSEKIEDASI RPLFQLLSKY GKETEAWSLV
401: KNLRFTDHSE HIRFMMNQFF RYQLRMTNEA IDTLQKVRKI EDFITTCKFN HAPFSNVISR CCQDGNTLSH AKLILAGLLN KHDPSAYKVS TFQEMINAYL
501: KAGRLDDALE TANMMVDANL RLVSILMKS

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.