Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G061700.1 | Wheat | golgi | 90.63 | 89.58 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 91.8 | 85.01 |
| HORVU2Hr1G011400.1 | Barley | cytosol | 67.2 | 78.78 |
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 73.16 | 78.6 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 63.79 | 72.43 |
| Os05t0365500-01 | Rice | nucleus | 61.45 | 63.34 |
| Zm00001d032900_P001 | Maize | mitochondrion | 48.99 | 56.58 |
| OQU78362 | Sorghum | cytosol | 41.0 | 56.2 |
| OQU93028 | Sorghum | mitochondrion | 51.12 | 54.86 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 35.25 | 53.56 |
| VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 31.42 | 47.05 |
| KRH26275 | Soybean | mitochondrion | 32.59 | 38.64 |
| CDY31037 | Canola | mitochondrion | 31.74 | 36.93 |
| Bra018451.1-P | Field mustard | mitochondrion | 31.74 | 36.93 |
| CDY25066 | Canola | cytosol | 5.01 | 36.43 |
| KRH06034 | Soybean | mitochondrion | 33.55 | 36.42 |
| CDY20645 | Canola | mitochondrion | 30.67 | 35.08 |
| CDX93444 | Canola | mitochondrion | 28.11 | 34.69 |
| CDY34898 | Canola | mitochondrion | 30.78 | 33.84 |
| Bra019952.1-P | Field mustard | mitochondrion | 29.39 | 33.7 |
| Bra031706.1-P | Field mustard | mitochondrion | 30.56 | 33.61 |
| CDY21873 | Canola | cytosol | 3.83 | 33.33 |
| CDX94912 | Canola | mitochondrion | 28.97 | 32.85 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 12.78 | 31.83 |
| AT1G10270.1 | Thale cress | mitochondrion | 30.88 | 31.76 |
| Solyc01g103160.2.1 | Tomato | nucleus | 32.8 | 31.62 |
| CDY65945 | Canola | cytosol | 22.36 | 30.93 |
| PGSC0003DMT400064089 | Potato | mitochondrion, plastid | 33.23 | 30.12 |
| CDY53878 | Canola | mitochondrion | 4.47 | 29.17 |
| TraesCS3A01G214000.1 | Wheat | cytosol | 18.21 | 25.79 |
| TraesCS1A01G352600.1 | Wheat | cytosol | 10.01 | 22.01 |
| AT3G60960.1 | Thale cress | mitochondrion | 8.84 | 20.6 |
| CDY25062 | Canola | mitochondrion | 7.88 | 20.39 |
| CDY33104 | Canola | mitochondrion | 7.88 | 20.11 |
| CDX95653 | Canola | mitochondrion | 8.31 | 19.45 |
| AT3G60980.1 | Thale cress | mitochondrion | 8.31 | 18.93 |
| CDY37773 | Canola | mitochondrion | 8.52 | 18.82 |
| CDX80067 | Canola | mitochondrion | 8.41 | 18.16 |
| Bra004488.1-P | Field mustard | cytosol | 7.88 | 18.0 |
| CDY10671 | Canola | mitochondrion | 7.56 | 17.79 |
| CDX95410 | Canola | cytosol | 0.96 | 17.31 |
| AT5G28380.1 | Thale cress | cytosol | 7.14 | 17.18 |
| AT5G28340.1 | Thale cress | cytosol | 7.45 | 16.09 |
| Bra000388.1-P | Field mustard | cytosol | 5.11 | 15.48 |
| CDX71714 | Canola | cytosol | 3.73 | 14.4 |
| Bra004487.1-P | Field mustard | mitochondrion | 7.24 | 12.85 |
| CDX80068 | Canola | mitochondrion | 7.24 | 12.85 |
| CDY37774 | Canola | mitochondrion | 6.6 | 11.27 |
| CDY53879 | Canola | cytosol | 0.96 | 5.0 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G063500.1 | EnsemblPlantsGene:TraesCS2A01G063500 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:27967243..27970497
Molecular Weight (calculated)
103328.0 Da
IEP (calculated)
8.071
GRAVY (calculated)
-0.746
Length
939 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALLRRLLL LRRLPVLHPQ PQPQPRLLPH TTTPTPHPAX XXSFSSAEEA AAERRRRKRR LRIEPPLHAL RRDPSAPPPP RDPNAPRLPD TTSSLVGPRL
101: SLHNRVQSLI RSGDLDGASA AARAAVSSRV RPTVFTCNAV AASMGRAGRH DDAVALFDFF FRCSGIVPNV VSYNTLILAH CEAGRVDEAL RAYQEMLDGA
201: TSFSPSAVSY RHLTKGLVAA ERIQEALELL HSMYHRGQGA DSIVYKNLID GYIALDDWDK AFELFAELTE KATVYDGVVH TSFMEGYWKK GMDKEAMENY
301: KSLLDRNFKM TPATCNVLLE TLFKHDKHKE ANDLWETMID NHSPPSFIGM NSESYNVMVN QCFKEGRFQD AIEVFHRQPR RNVQMDVGCF NNIIGKLCEK
401: GMLAEAEKLF EEMESKSVLP DVYTYTFLVD LCFKEGRVDD TIQYFYKMAD GREHGPKFNI GFFNRMFEGL SQAGRIDDAL KVYGRMSDKE IKPNTTTFEI
501: LVNALCKEGE LDRALDLVRD MARSGVVATP EFRESVGEIF KNADRHEEIE KAFEEKPVPL PPQPRPEVRP RSSPQGLPGF ASNQTRGSYT PNQGQPGYGS
601: PQPFHPANAA SQVRQPEWMS PKLQQPVSGN QQVEKTDVGA SNKWLHGISS PQEKQHGIAL PQDGKQPEFG TSRPWQQTVG APQVQQPNFG SATPLQPGFG
701: SRPQQPPHVA HETQHPGFGT SRPWQTGYGA HQAQQPGHGA HQAQQPGYGA HQAQQPGYGA HQAQQPGYGA HQAQQPGYGA HQAQQAGYGA HQAQQPGYGT
801: HRAQQPGYGA QQAQQPRYGA NQAQQPGYGA HQAQQPGYGA HQGQQPRYGA HQGHQPGYGT HQAQQPGYGA SQPSQPSFGA PEAPRSSLGS AQSLPHYGHI
901: GNEHDQLGSS RQGGPAFSTQ PPQTAEAPDN MAIKYSQRY
101: SLHNRVQSLI RSGDLDGASA AARAAVSSRV RPTVFTCNAV AASMGRAGRH DDAVALFDFF FRCSGIVPNV VSYNTLILAH CEAGRVDEAL RAYQEMLDGA
201: TSFSPSAVSY RHLTKGLVAA ERIQEALELL HSMYHRGQGA DSIVYKNLID GYIALDDWDK AFELFAELTE KATVYDGVVH TSFMEGYWKK GMDKEAMENY
301: KSLLDRNFKM TPATCNVLLE TLFKHDKHKE ANDLWETMID NHSPPSFIGM NSESYNVMVN QCFKEGRFQD AIEVFHRQPR RNVQMDVGCF NNIIGKLCEK
401: GMLAEAEKLF EEMESKSVLP DVYTYTFLVD LCFKEGRVDD TIQYFYKMAD GREHGPKFNI GFFNRMFEGL SQAGRIDDAL KVYGRMSDKE IKPNTTTFEI
501: LVNALCKEGE LDRALDLVRD MARSGVVATP EFRESVGEIF KNADRHEEIE KAFEEKPVPL PPQPRPEVRP RSSPQGLPGF ASNQTRGSYT PNQGQPGYGS
601: PQPFHPANAA SQVRQPEWMS PKLQQPVSGN QQVEKTDVGA SNKWLHGISS PQEKQHGIAL PQDGKQPEFG TSRPWQQTVG APQVQQPNFG SATPLQPGFG
701: SRPQQPPHVA HETQHPGFGT SRPWQTGYGA HQAQQPGHGA HQAQQPGYGA HQAQQPGYGA HQAQQPGYGA HQAQQPGYGA HQAQQAGYGA HQAQQPGYGT
801: HRAQQPGYGA QQAQQPRYGA NQAQQPGYGA HQAQQPGYGA HQGQQPRYGA HQGHQPGYGT HQAQQPGYGA SQPSQPSFGA PEAPRSSLGS AQSLPHYGHI
901: GNEHDQLGSS RQGGPAFSTQ PPQTAEAPDN MAIKYSQRY
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.