CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26275	Soybean	mitochondrion	62.77	68.56
VIT_12s0035g01700.t01	Wine grape	mitochondrion	45.43	62.68
GSMUA_Achr10P...	Banana	mitochondrion, plastid	35.26	49.35
Bra018451.1-P	Field mustard	mitochondrion	37.69	40.4
Bra019952.1-P	Field mustard	mitochondrion	38.15	40.29
Bra031706.1-P	Field mustard	mitochondrion	39.19	39.7
Solyc01g103160.2.1	Tomato	nucleus	42.54	37.78
TraesCS2A01G524300.1	Wheat	mitochondrion	35.95	37.61
Zm00001d032900_P001	Maize	mitochondrion	35.26	37.52
PGSC0003DMT400064089	Potato	mitochondrion, plastid	43.93	36.68
Os05t0365500-01	Rice	nucleus	37.57	35.68
OQU93028	Sorghum	mitochondrion	36.07	35.66
TraesCS2D01G527300.1	Wheat	mitochondrion	35.14	35.6
TraesCS2D01G061700.1	Wheat	golgi	36.99	33.68
TraesCS2A01G063500.1	Wheat	mitochondrion	36.42	33.55
OQU78362	Sorghum	cytosol	26.24	33.14
TraesCS2B01G554300.1	Wheat	nucleus	36.76	31.55
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	36.76	31.36
HORVU2Hr1G011400.1	Barley	cytosol	26.24	28.34
KRH53501	Soybean	mitochondrion	19.77	27.06
KRH64444	Soybean	mitochondrion	19.54	26.78
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	26.82	26.54
AT3G60980.1	Thale cress	mitochondrion	10.06	21.12
CDY25062	Canola	mitochondrion	8.55	20.39
CDY33104	Canola	mitochondrion	8.55	20.11
CDX71714	Canola	cytosol	4.51	16.05

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100797162	MapMan:35.1	EMBL:ACUP02009815	EnsemblPlantsGene:GLYMA_16G001000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7MEB5	EnsemblPlants:KRH06034	ProteinID:KRH06034
ProteinID:KRH06034.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002967E55	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:66858..70890

Molecular Weight (calculated)

95622.7 Da

IEP (calculated)

9.132

GRAVY (calculated)

-0.543

Length

865 amino acids

Sequence
(BLAST)

001: MSVYRLLLRR VAAARPMFSL TQTRSYAFSS AEEAAAERRR RKRRLRIEPP LNAIRPPPQQ GPPRDPNAPR LPDSTSALVG PRLSLHNRVQ SLIRAGDLDA
101: ASAIARHSVF SATRPTVFTC NAIIAAMYRS GRYEEAIGLF QFFFKQSNIV PNIVSYNNVI NTHCDEGRVD VALEVYRHVL ANAPFSPSPV TYRHLTKGLI
201: QSSRISEALD LLREMLTKGH GADSLVYNNL ISGFLHLDNF DKAIELFEEL KERCLVYDGV VNATFMEWFF GKGRDKEAMD SYRSLLDRQF RMTPATCNVL
301: LEVLLKHSKS NEAWSLFHLM LDNHTPPNFQ AVNSDTFNIM VNHCFKLGNF EDALATFKKF GTKPNSKPFA MDVAGYNNII ARFSENGMLS HAETLFEELC
401: SKSLSPDVPT HRTLIEAYLR MNRIDDALRI FNRMVDTGLR VVATFGRERD ARLIKNGKAL DCAQILSKMG EKDPKPDPTC YEVVIKGLCA DGLLDKSLEL
501: LDEVMRYGVG LTSSLREFVT EVFKKAGRSD EIERLLDMNR FAYTPRPSPP RPAYRPPPPP PVRFPSQMAG AAHNPPSGFQ TQMAAQWHPT PPPQMTGAHY
601: PPSQMAGAAH NPPSGFQTQM AAQQPPTPPP PQMTGAHYPP SQMAGAAHNP PSGFQTQMAA QQRPTPPPPQ MTGAHYPPSQ MAGAAHNTPS GAPHQVLGHQ
701: RPPLPSQMTG MHQPSWGLSP PMTGPHPGSS PHMTGQSYHP NTSEHPPHMS RVAPQMTEQH YTPSGSSPQM AGHGHQPYGT PHGPQQMEER WYPSSGLSPP
801: MSGSSIPWNG ASAKMSPPYH RSAAPSSQVT GPYHPSSSSS SPPHFEESHQ QQSEVPEQLG NAKPF

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.