Factsheet for Bra019952.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015218.1-P
Bra039839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	Bra015218.1-P	AT2G15400.1	16489121
AT1G10270.1	Bra039839.1-P	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93444	Canola	mitochondrion	89.62	96.45
Bra031706.1-P	Field mustard	mitochondrion	78.14	74.94
AT1G10270.1	Thale cress	mitochondrion	77.78	69.77
Bra018451.1-P	Field mustard	mitochondrion	62.27	63.2
VIT_12s0035g01700.t01	Wine grape	mitochondrion	38.58	50.4
GSMUA_Achr10P...	Banana	mitochondrion, plastid	32.84	43.53
KRH26275	Soybean	mitochondrion	39.8	41.16
KRH06034	Soybean	mitochondrion	40.29	38.15
TraesCS2A01G524300.1	Wheat	mitochondrion	34.19	33.86
Zm00001d032900_P001	Maize	mitochondrion	33.09	33.33
OQU93028	Sorghum	mitochondrion	34.31	32.11
TraesCS2D01G527300.1	Wheat	mitochondrion	33.33	31.97
Solyc01g103160.2.1	Tomato	nucleus	37.73	31.72
Os05t0365500-01	Rice	nucleus	34.8	31.28
OQU78362	Sorghum	cytosol	24.79	29.64
PGSC0003DMT400064089	Potato	mitochondrion, plastid	37.48	29.63
TraesCS2A01G063500.1	Wheat	mitochondrion	33.7	29.39
TraesCS2D01G061700.1	Wheat	golgi	34.07	29.37
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	34.92	28.21
TraesCS2B01G554300.1	Wheat	nucleus	34.55	28.08
Bra019587.1-P	Field mustard	cytosol	17.46	25.44
HORVU2Hr1G011400.1	Barley	cytosol	24.54	25.09
Bra017999.1-P	Field mustard	cytosol	17.09	24.82
Bra029944.1-P	Field mustard	mitochondrion, plastid	18.93	23.99
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	25.4	23.8
Bra004488.1-P	Field mustard	cytosol	10.26	20.44
Bra000388.1-P	Field mustard	cytosol	7.08	18.71
Bra004487.1-P	Field mustard	mitochondrion	10.99	17.01

Protein Annotations

EnsemblPlants:Bra019952.1	EnsemblPlants:Bra019952.1-P	EnsemblPlantsGene:Bra019952	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF393	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI000253E9A0	UniProt:M4DTV9	MapMan:35.1	:

Description

AT1G10270 (E=1e-275) GRP23 | GRP23 (GLUTAMINE-RICH PROTEIN23); binding

Coordinates

chrA06:+:3535202..3537661

Molecular Weight (calculated)

91940.3 Da

IEP (calculated)

7.820

GRAVY (calculated)

-0.711

Length

819 amino acids

Sequence
(BLAST)

001: MSLRHLLRHR LYAATTTTAP IPITLIQQRF YNISFSPQTE DPKTIADTQE SFQLNDPSQF QIRNRTFSSA EEADAARRKQ RRQSRIQPPL NALRRDPPPK
101: RDPNAPRLPD STSSLVGQRL NLHNRVQSLI RASDLDAASR LARNSVFSST RPTVFTCNAI IAAMCRAKRY GDSISLFEFF FKRNHIVPNV VSYNQIINAH
201: CDEGHVEEAL EVYRYVLANS PFAPSSVTYR HLTRGLVQAG RSGDAASLLR EMLSKGLAAD SIAYSNLIRG FLDLGELDKA NEFFDELRSK CTVYDGIVNA
301: TFMEYWFEKG EDEEAMECYR SLLEKKFRMY PHTGNVLLEV FLKYGKKSEA WDLFNEMLDN HTPPNILSVN SETVGIMVNE CFKMGKFEEA VETFKKVGRK
401: PTSRPFVMDY VGYCNIVTRF CEHGMLPEAE RLFAEGVGKS LPADAPSHRA MIDAYLKAER VDDALKMLNR MVDVNLRVVA DFGTRVFGEL IENGKLVESA
501: EVLTKMGERE PKPDSSIYDV VVRGLCDGGA LDQAKDIIGQ MVGYSVGVAP VLREFIIETF EKAKRRDEIE KTLNTVTRPV RNSLRSGNTA PGVPSVLGAT
601: SAAPQQPREK VPWTNQGPGS GQTTGGTYKA NNGQNPSWSN TSSNQQQQPW SNQTAGRQTP SWSSQAPGYQ QQQSWSQQPG WSSPSSHQQS WDNQTTGQQQ
701: QWGIQTGHNQ QQWANQTPGQ QQPWGNQNTG HHQQQWNNQT AGQQSAWTGQ QQQQQPWSNQ TASHQQSQWS NPTSGQVAAN QALWSNSGNG HLSQQQEPVS
801: SSSHEWQDGE EKKVVELRN

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.