Factsheet for Bra019587.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002289.1-P
Bra020096.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	Bra002289.1-P	AT5G20280.1	21798944
AT3G49240.1	Bra020096.1-P	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86985	Canola	mitochondrion	94.48	90.15
CDY00193	Canola	plastid	90.57	87.61
Bra017999.1-P	Field mustard	cytosol	78.47	78.19
AT3G49240.1	Thale cress	cytosol, plastid	83.27	74.4
Bra029944.1-P	Field mustard	mitochondrion, plastid	82.74	71.98
KRH53501	Soybean	mitochondrion	62.63	55.7
KRH64444	Soybean	mitochondrion	62.1	55.31
HORVU3Hr1G052300.1	Barley	plastid	12.63	52.99
VIT_16s0098g01840.t01	Wine grape	plastid	60.68	52.22
PGSC0003DMT400023464	Potato	plastid	59.79	51.53
Solyc03g083280.2.1	Tomato	nucleus	43.24	47.83
EES03220	Sorghum	mitochondrion, plastid	50.89	42.94
Zm00001d044388_P001	Maize	plastid	41.81	42.42
Os11t0433600-01	Rice	nucleus	36.12	41.68
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	48.4	41.4
GSMUA_Achr9P05870_001	Banana	mitochondrion	46.98	41.19
TraesCS3A01G214000.1	Wheat	cytosol	47.33	40.12
TraesCS3D01G216600.1	Wheat	cytosol	47.15	39.97
HORVU3Hr1G052280.1	Barley	cytosol, plastid	47.15	39.97
TraesCS3B01G244700.1	Wheat	cytosol	47.33	39.52
TraesCS1B01G369200.1	Wheat	mitochondrion	39.5	34.53
TraesCS1D01G357400.1	Wheat	mitochondrion	38.08	33.65
EES19865	Sorghum	mitochondrion	39.68	33.58
HORVU1Hr1G080900.3	Barley	cytosol, plastid	39.68	33.28
Zm00001d038733_P001	Maize	mitochondrion	38.61	32.58
TraesCS1A01G352600.1	Wheat	cytosol	24.73	32.55
Os05t0534000-01	Rice	cytosol	14.06	27.43
Bra019952.1-P	Field mustard	mitochondrion	25.44	17.46
Bra018451.1-P	Field mustard	mitochondrion	24.38	16.98
Bra031706.1-P	Field mustard	mitochondrion	25.62	16.86
Bra004488.1-P	Field mustard	cytosol	5.52	7.54
Bra004487.1-P	Field mustard	mitochondrion	6.58	6.99
Bra000388.1-P	Field mustard	cytosol	3.38	6.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra019587	EnsemblPlants:Bra019587.1	EnsemblPlants:Bra019587.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DSU4
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253EF7F	SEG:seg

Description

AT3G49240 (E=2e-249) emb1796 | emb1796 (embryo defective 1796); ATP binding

Coordinates

chrA06:-:11943623..11945311

Molecular Weight (calculated)

63772.9 Da

IEP (calculated)

5.059

GRAVY (calculated)

-0.426

Length

562 amino acids

Sequence
(BLAST)

001: MSFATQEEAA AAESRRRKRR IRMEPPPLNR SNQPQISRPI QNPNIPKLPE SVSALTGKRL DLHNHILKLI RENDLEEAAL YTRHSVYSNC RPTIFTVNAV
101: LTAQLRQSKY GALLQLHGFV NQAGIAANII TYNLIFQAYL DLRKPDVALE HYKLFIDNAP LNPSVATFRI LVKGLVDNGS LEKAMEIKED MSVRGFVPDP
201: VVYSYLMVGC VRKSDADGVF KLYEELKEKL GGFVEDGVVY GLLMKGYFMK GMEKEATECC EEAIGENSKV RMSAMAYNYV LEALSENGKF DEALKLFDEM
301: KREHDPPRRL ALNLGSFNVM VNGYCGEGKF VEALEVFRQM GEFSCSPDTL SFNNLMNQLC ENGLLAEAEK LYNEMNENKV KPDEYTYGLL MDTCFKEGKI
401: VEGAAYYKTM VESSLRTNLA VYNRLQDQLV KAGKLDDAKS FFDMMVSKLK MDDEAYKFIM KALSEAGRLD EMLKIVDEML GDETVRVSEE IQEFVKEELR
501: KGGREDDLQK LMDEKERLKE EAKAKELEAA EAKKRSTNIS IASLMSPKLE EEKKEEVKDA LG

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.