Factsheet for Solyc03g083280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g007790.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	Solyc07g007790.2.1	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023464	Potato	plastid	97.05	75.61
HORVU3Hr1G052300.1	Barley	plastid	15.55	58.96
VIT_16s0098g01840.t01	Wine grape	plastid	62.99	49.0
CDY05914	Canola	cytosol	14.17	47.68
KRH64444	Soybean	mitochondrion	57.87	46.59
KRH53501	Soybean	mitochondrion	54.72	43.99
Bra019587.1-P	Field mustard	cytosol	47.83	43.24
CDX86985	Canola	mitochondrion	49.8	42.95
Bra017999.1-P	Field mustard	cytosol	47.64	42.91
CDY00193	Canola	plastid	48.82	42.69
CDX68524	Canola	cytosol, mitochondrion, plastid	51.77	41.88
CDY08118	Canola	plastid	49.02	41.78
Bra029944.1-P	Field mustard	mitochondrion, plastid	52.36	41.18
CDX83077	Canola	mitochondrion, plastid	50.39	40.76
AT3G49240.1	Thale cress	cytosol, plastid	49.8	40.22
EES03220	Sorghum	mitochondrion, plastid	47.83	36.49
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	46.06	35.62
GSMUA_Achr9P05870_001	Banana	mitochondrion	44.09	34.95
TraesCS3A01G214000.1	Wheat	cytosol	44.29	33.94
HORVU3Hr1G052280.1	Barley	cytosol, plastid	44.29	33.94
TraesCS3D01G216600.1	Wheat	cytosol	44.09	33.79
Zm00001d044388_P001	Maize	plastid	36.22	33.21
TraesCS3B01G244700.1	Wheat	cytosol	43.5	32.84
Os05t0534000-01	Rice	cytosol	16.34	28.82
Os11t0433600-01	Rice	nucleus	26.57	27.72
TraesCS1B01G369200.1	Wheat	mitochondrion	31.5	24.88
TraesCS1D01G357400.1	Wheat	mitochondrion	30.91	24.69
EES19865	Sorghum	mitochondrion	32.09	24.55
HORVU1Hr1G080900.3	Barley	cytosol, plastid	32.09	24.33
Zm00001d038733_P001	Maize	mitochondrion	30.51	23.27
TraesCS1A01G352600.1	Wheat	cytosol	17.13	20.37
CDY05913	Canola	cytosol	18.11	18.89
Solyc01g103160.2.1	Tomato	nucleus	23.03	12.01

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006349	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009960	GO:GO:0009987	GO:GO:0016787	GO:GO:0040029	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4BIA4	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc03g083280.2	EnsemblPlants:Solyc03g083280.2.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002768AFF	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein At3g49240 [Source:Projected from Arabidopsis thaliana (AT3G49240) UniProtKB/Swiss-Prot;Acc:Q9M3A8]

Coordinates

chr3:-:53120152..53122360

Molecular Weight (calculated)

57247.2 Da

IEP (calculated)

6.130

GRAVY (calculated)

-0.579

Length

508 amino acids

Sequence
(BLAST)

001: MALSKHIFLT HHLRTLAKPH YLRHPQPPPS FISLRLLSFA TPEEAAAERR KRKRRLRIEP PLSSLRQQHQ PRPTTPQNPS STNNPNAPKI PETVSVLSGN
101: RLNLHNRILK LIRENDLDEA ALYTRHSVYS NCRPTIFTCN AVMAAQLRQS RYSDLLSLHR FITQAGIGAN IVTHNLLLTA FMDCRKTDMA MEHYKQLINN
201: APFNPSPTTY RILIKGLVDN NKIDRAMELK EEMLSKGMGE KRCRPDTLSY NNLIEQLCKN DLLGEAEELY KDMGEKGVSP DEFTFVLLMD TCFKESRPDD
301: AAAYFKTMVE SKLRPNLGVY DRLVDGLVKV GKVDEAKSFF DLMMGKLRMN DDSYKFMMNA LFDIGQHDEV LKIVDRMLRE DPADFSDELQ EFVREALAKE
401: GRDEELTKLM DDIEREKKEA ADREAEAAEK AKASARAAVS SLINSPKLFG NKQPEEQSTI TGEAASINDN DKQEEVSVQE TAAEASSSGE GGEAESLVAA
501: EARSDGAL

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.