Factsheet for HORVU3Hr1G052280.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G002280.1
HORVU6Hr1G028330.1
HORVU7Hr1G115590.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	HORVU3Hr1G002280.1	AT5G20280.1	21798944
AT3G49240.1	HORVU6Hr1G028330.1	AT5G20280.1	21798944
AT3G49240.1	HORVU7Hr1G115590.10	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G216600.1	Wheat	cytosol	95.32	95.32
TraesCS3A01G214000.1	Wheat	cytosol	94.57	94.57
TraesCS3B01G244700.1	Wheat	cytosol	94.12	92.72
Os11t0433600-01	Rice	nucleus	59.73	81.31
HORVU3Hr1G052300.1	Barley	plastid	15.99	79.1
EES03220	Sorghum	mitochondrion, plastid	77.07	76.73
Zm00001d044388_P001	Maize	plastid	63.35	75.81
GSMUA_Achr9P05870_001	Banana	mitochondrion	59.13	61.15
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	59.43	59.97
VIT_16s0098g01840.t01	Wine grape	plastid	48.72	49.46
KRH53501	Soybean	mitochondrion	46.91	49.21
HORVU1Hr1G080900.3	Barley	cytosol, plastid	48.57	48.06
KRH64444	Soybean	mitochondrion	45.7	48.02
PGSC0003DMT400023464	Potato	plastid	46.76	47.55
Bra019587.1-P	Field mustard	cytosol	39.97	47.15
Bra017999.1-P	Field mustard	cytosol	39.67	46.63
CDY00193	Canola	plastid	40.72	46.47
CDY08118	Canola	plastid	40.42	44.97
CDX86985	Canola	mitochondrion	39.52	44.48
Solyc03g083280.2.1	Tomato	nucleus	33.94	44.29
CDX83077	Canola	mitochondrion, plastid	41.93	44.27
AT3G49240.1	Thale cress	cytosol, plastid	41.78	44.04
Bra029944.1-P	Field mustard	mitochondrion, plastid	42.53	43.65
CDX68524	Canola	cytosol, mitochondrion, plastid	41.33	43.63
CDY05914	Canola	cytosol	7.54	33.11
CDY05913	Canola	cytosol	22.02	29.98
HORVU2Hr1G011400.1	Barley	cytosol	17.35	14.36
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	17.5	13.27

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:AK366347	ncoils:Coil	UniProt:F2DR29	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU3Hr1G052280	EnsemblPlants:HORVU3Hr1G052280.1	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00020073C7
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DR29]

Coordinates

chrchr3H:+:378657918..378660390

Molecular Weight (calculated)

73022.1 Da

IEP (calculated)

5.041

GRAVY (calculated)

-0.349

Length

663 amino acids

Sequence
(BLAST)

001: MALSKPLFSR LLPFSLRLPV RPQHRLLCLA TPSDLPDAPT DASAERRRRK RRLRVEPPSS RGPTPQRTPG GPRPSSNPNA LKLPEPASVL SGKRLDLHRR
101: ILTLVRENDL DEAALLTRHS IYSNCRPTVF TCNTVLAALL RQARYADLLS LHRFVTQASV APTVATHNLL LQAYCDCRRP ETALEHFRLL LKDDSPLLPS
201: PTTYRILARS LAENGKLDLA LELKDGMLER GLIAPDPQVY AFVMGGFVNA GDGDTAVSLY EELKEKLGGG LILDGVVYGN LMKGYFLKGM EKEAMDCYTE
301: VLGEGSKVRF GAVSYNMVLD ALGRNGRLDD AVELFDRMCK EHDPPRRIAV NLGSFNVMVD AYCGVERFQD AIEVFGKMGE KSCTPDALSY NSLINWLGKN
401: KLVGEAEELY KEMGERGINP DEYTYVLLIE SCFRVDNVDD AVGYFSKMFD VGLRPNANAF NKVISGLVKV DRIDEAQGFF DLMTEKEVKP NIASCESLLR
501: AYINVARLDD AIKMAKGILL DESIVFTDEL KALLEGALEK EGRNGDMTKL YEDVETEKAE AAARAAEEKA RAEALAKEEE EKKKAEAKAK EESAARASRA
601: AIDAVLGRKS GAENVESSQE MSVEEAQVVE SHTDTVGAAE QNEGDDQKKE SGDASSQVIA SSS

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.