CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
mitochondrion 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG20466
KXG29640
OQU78428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	KXG20466	AT5G20280.1	21798944
AT3G49240.1	KXG29640	AT5G20280.1	21798944
AT3G49240.1	OQU78428	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044388_P001	Maize	plastid	78.98	94.95
Os11t0433600-01	Rice	nucleus	61.26	83.78
TraesCS3D01G216600.1	Wheat	cytosol	78.53	78.88
TraesCS3A01G214000.1	Wheat	cytosol	77.93	78.28
HORVU3Hr1G052280.1	Barley	cytosol, plastid	76.73	77.07
HORVU3Hr1G052300.1	Barley	plastid	15.47	76.87
TraesCS3B01G244700.1	Wheat	cytosol	75.98	75.19
GSMUA_Achr9P05870_001	Banana	mitochondrion	60.66	63.03
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	61.41	62.25
Bra019587.1-P	Field mustard	cytosol	42.94	50.89
EES19865	Sorghum	mitochondrion	50.45	50.6
CDY00193	Canola	plastid	43.39	49.74
KRH53501	Soybean	mitochondrion	47.15	49.68
PGSC0003DMT400023464	Potato	plastid	48.35	49.39
VIT_16s0098g01840.t01	Wine grape	plastid	48.35	49.31
CDX86985	Canola	mitochondrion	43.39	49.07
KRH64444	Soybean	mitochondrion	46.4	48.97
Solyc03g083280.2.1	Tomato	nucleus	36.49	47.83
Bra017999.1-P	Field mustard	cytosol	40.09	47.34
CDX83077	Canola	mitochondrion, plastid	43.84	46.5
CDX68524	Canola	cytosol, mitochondrion, plastid	43.69	46.34
AT3G49240.1	Thale cress	cytosol, plastid	43.39	45.95
CDY08118	Canola	plastid	40.99	45.81
Bra029944.1-P	Field mustard	mitochondrion, plastid	44.14	45.51
CDY05914	Canola	cytosol	7.66	33.77
CDY05913	Canola	cytosol	21.62	29.57
OQU93028	Sorghum	mitochondrion	26.88	20.46
OQU78362	Sorghum	cytosol	18.92	18.39

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8082197	UniProt:C5XQ70	ncoils:Coil	EnsemblPlants:EES03220
ProteinID:EES03220	ProteinID:EES03220.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3003G208300	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A84EBC
RefSeq:XP_002458100.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:53954656..53957809

Molecular Weight (calculated)

73491.9 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.384

Length

666 amino acids

Sequence
(BLAST)

001: MALSKPLLSR LLPLPLRLRP QARFLCLASP TSTPTPTPVD DGQAPADAAA ERRRRKRRLR VEPPLSRGPA PQRAPGAPRP ASNPNAPKIP EPASVLSGKR
101: LDLHRRILTL IRENDLDEAA LLTRHSIYSN CRPTVFTCNA VLAALLRQAR YADLLSLHRF VTQASVAPTV ATYNLLLQAY CDCRRPDVAL EHFRLLLKDD
201: SPVLPSPTTY RILARSLAEN GKLDQALELK DGMLERGLIA PDTQVYAFIM GGFVNAGDGD KAVSLYEELK EKLGGEPILD GVVYGNLMKG YFLKGMEKEA
301: MDCYAEVLGE GSKVRFGATS YNMVLDALGR NGRLEDALKL FDRMCVEHDP PRTIAVNLGS FNVMVDAYCR AERFQDAIEV FGKMAEKRCA PDALSYNNLI
401: DWLGKNELVG EAEGLYKEMG ERGVKPDEYT YVLLIESCFK VDRVEDAVSY FNKMLDAGLR PNANAFNKVI GGLVKVDRLS EAQGFFDMMP EKEVKPNIAS
501: YELLLKAYVA AARLDDAIKI AKGILLDESV VFSDEMKTLL EEALEKEGRD GEMTKLYEDV EREKAEAAAR AAEEKARAEA LAKEEEERKK AEAKAKEEAA
601: ARASRAAIEA VLGRKKEAEK QEPVDGLNVE EAEVVESNSD TSDVSGEQSE GDEQKKQEPA EASSCS

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.