Factsheet for GSMUA_Achr9P05870_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P06050_001
GSMUA_Achr9P22510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	GSMUA_Achr4P06050_001	AT5G20280.1	21798944
AT3G49240.1	GSMUA_Achr9P22510_001	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	81.44	79.45
HORVU3Hr1G052300.1	Barley	plastid	13.57	64.93
EES03220	Sorghum	mitochondrion, plastid	63.03	60.66
Os11t0433600-01	Rice	nucleus	46.02	60.57
Zm00001d044388_P001	Maize	plastid	51.33	59.39
HORVU3Hr1G052280.1	Barley	cytosol, plastid	61.15	59.13
TraesCS3A01G214000.1	Wheat	cytosol	61.15	59.13
TraesCS3D01G216600.1	Wheat	cytosol	60.84	58.82
TraesCS3B01G244700.1	Wheat	cytosol	60.37	57.5
KRH53501	Soybean	mitochondrion	49.45	50.16
KRH64444	Soybean	mitochondrion	48.67	49.45
VIT_16s0098g01840.t01	Wine grape	plastid	50.23	49.31
Bra017999.1-P	Field mustard	cytosol	41.5	47.16
Bra019587.1-P	Field mustard	cytosol	41.19	46.98
PGSC0003DMT400023464	Potato	plastid	47.11	46.32
CDY00193	Canola	plastid	41.65	45.96
EES19865	Sorghum	mitochondrion	47.58	45.93
TraesCS1D01G357400.1	Wheat	mitochondrion	45.4	45.75
AT3G49240.1	Thale cress	cytosol, plastid	44.77	45.63
TraesCS1B01G369200.1	Wheat	mitochondrion	45.71	45.57
CDX86985	Canola	mitochondrion	41.5	45.16
CDY08118	Canola	plastid	41.97	45.13
CDX83077	Canola	mitochondrion, plastid	44.15	45.06
TraesCS1A01G352600.1	Wheat	cytosol	29.95	44.96
Zm00001d038733_P001	Maize	mitochondrion	46.65	44.89
HORVU1Hr1G080900.3	Barley	cytosol, plastid	46.18	44.18
Solyc03g083280.2.1	Tomato	nucleus	34.95	44.09
CDX68524	Canola	cytosol, mitochondrion, plastid	42.9	43.79
Bra029944.1-P	Field mustard	mitochondrion, plastid	43.53	43.19
Os05t0534000-01	Rice	cytosol	18.88	42.01
CDY05914	Canola	cytosol	8.42	35.76
CDY05913	Canola	cytosol	21.53	28.34
GSMUA_Achr10P...	Banana	mitochondrion, plastid	25.12	26.05

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr9G05870_001	EnsemblPlants:GSMUA_Achr9P05870_001	EnsemblPlants:GSMUA_Achr9T05870_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TXU6
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002949E73	SEG:seg	:

Description

Putative Pentatricopeptide repeat-containing protein At3g49240 [Source:GMGC_GENE;Acc:GSMUA_Achr9G05870_001]

Coordinates

chr9:+:3750693..3752922

Molecular Weight (calculated)

71155.9 Da

IEP (calculated)

5.346

GRAVY (calculated)

-0.422

Length

641 amino acids

Sequence
(BLAST)

001: MALSKPLFFS HHLRSLKPYY APAAFPFASH LRLLSFATPE EAAAERRRRK RRLRIEPPLS SLRHQQHPPA SSAPPPRSPR TAPNPNAPKL PEPISALAGS
101: RLNLHNRILT LIRENDLDEA ALLVRHSIYS NCRPTIFTAN AVLYALLRQS RYADLLSLHR FITQANVAPT VITVNLLLQA YCDCRKTDIA LEHFRLLLKD
201: DAPFPPSPTT YRIVTKGLID NSKLDQALEF KDDMLAKAVV PPDPVVYNHL MWGFVKKGDP DKVVSLYEEL LEKLGGGKIL DGIVYGNLMK GYFGKEMEKE
301: AMETYHDVLG EGSKVRFGAV SYNQVLDALG RNGKLEEAIT LFDRMLKEHD PPRTITVNLG TFNVMVDAYC LAGRFQDAVT AEELYKEMGE RGINPDEYTY
401: VLLVEACFGV DRVDDATAYF QKMVELGLRP NATAYNKVIG GLANVVTLDE AKNFFDQMLE TEVKPNVASY ELLLKGFIDC GRLEDGLKTL KDLLLDDGVT
501: LSQEMKELVE EALRKEGRDE EMGKVYEDVE REKAERLARE AEEKARAEAL AREEEERKKR EAAEKEAAAA RASAAAIEAI LGRKKDAAKE ESPAGGGEEK
601: NGSVESKPTD APPEGEVLAE ARNGGEGTEG AGDPSQQVST T

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.