Factsheet for TraesCS1D01G357400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G015500.1
TraesCS3D01G013000.1
TraesCS6A01G144800.1
TraesCS6B01G173000.2
TraesCS6D01G133800.1
TraesCS7A01G518200.1
TraesCS7B01G434300.1
TraesCS7D01G508100.1
TraesCSU01G044500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	TraesCS3A01G015500.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS3D01G013000.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6A01G144800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6B01G173000.2	AT5G20280.1	21798944
AT3G49240.1	TraesCS6D01G133800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7A01G518200.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7B01G434300.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7D01G508100.1	AT5G20280.1	21798944
AT3G49240.1	TraesCSU01G044500.2	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G369200.1	Wheat	mitochondrion	95.13	94.09
TraesCS1A01G352600.1	Wheat	cytosol	59.43	88.52
HORVU1Hr1G080900.3	Barley	cytosol, plastid	90.41	85.82
Zm00001d038733_P001	Maize	mitochondrion	73.9	70.57
EES19865	Sorghum	mitochondrion	73.27	70.18
Os05t0534000-01	Rice	cytosol	29.87	65.97
TraesCS3D01G216600.1	Wheat	cytosol	49.37	47.36
GSMUA_Achr9P05870_001	Banana	mitochondrion	45.75	45.4
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	46.7	45.21
KRH53501	Soybean	mitochondrion	38.36	38.61
Bra019587.1-P	Field mustard	cytosol	33.65	38.08
Bra017999.1-P	Field mustard	cytosol	32.86	37.06
CDY00193	Canola	plastid	33.65	36.83
VIT_16s0098g01840.t01	Wine grape	plastid	37.58	36.6
CDX86985	Canola	mitochondrion	33.65	36.33
KRH64444	Soybean	mitochondrion	35.69	35.97
CDY08118	Canola	plastid	33.33	35.57
PGSC0003DMT400023464	Potato	plastid	36.32	35.43
CDX83077	Canola	mitochondrion, plastid	34.91	35.35
AT3G49240.1	Thale cress	cytosol, plastid	33.96	34.34
CDX68524	Canola	cytosol, mitochondrion, plastid	33.49	33.92
CDY05914	Canola	cytosol	8.02	33.77
Bra029944.1-P	Field mustard	mitochondrion, plastid	34.28	33.75
Solyc03g083280.2.1	Tomato	nucleus	24.69	30.91
CDY05913	Canola	cytosol	16.35	21.36
TraesCS2D01G527300.1	Wheat	mitochondrion	23.43	17.45
TraesCS2D01G061700.1	Wheat	golgi	23.27	15.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1616	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
EnsemblPlantsGene:TraesCS1D01G357400	EnsemblPlants:TraesCS1D01G357400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:441303082..441304992

Molecular Weight (calculated)

69095.7 Da

IEP (calculated)

5.216

GRAVY (calculated)

-0.131

Length

636 amino acids

Sequence
(BLAST)

001: MSLSKPLAAR RLVPALFPLA HADAASAAAS RRARRRGAFV ATPPAPPPSP SSVRLAEPLP SLAPSRLALH NRVLALLSPD LDEAALLTRH ALHSNCRPSS
101: FTCVAVLAAL LRARRLDDFF ALHRFALQAA VPPTAATHAL YLSALAARRL PDAALLHLRL IARPGSPVPP SPTAYRAVVR CLVADHGRLA DAVALKDEML
201: ASGFVGPDPH VYSLLMAGFV EAGDGAKAVE LHQELQDKLG GEPVLDGIVY GSLMKAYFLM GMEEKAMDCY KEVFAPESEV RFGTESYNEV LDALGKNQRL
301: EDALNLFDRM LGEHDPPLRI TVDVRSFSVM VDAYCAAGRF EDAIAVFRRM GEYKVVPDVA AYNNLIRHLG LNRLVDEPEV IHKEMGEHSL AADEETCVLL
401: MEACFRADRV DDGISYFDRM AELELKPDAS AYHRIVDGLV GLSLLDKAQE YFDQMREKEI HPSIATYETL LKAYVGVGAT RLDDAAKVAK CVLLDENVVF
501: SDVMRELLEG ALRGEGREDD MAKLYEDVER EKAEAVLRAE EEKTRAEALA REERAARRAE AAAKDEAAAK ASAAAIEAII GHRRKTEGET AEPASTPNAL
601: DGGLLSRLGL SSPGQGAPQD TPIISTETKG DGQEQF

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.