CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG20466
KXG29640
OQU78428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	KXG20466	AT5G20280.1	21798944
AT3G49240.1	KXG29640	AT5G20280.1	21798944
AT3G49240.1	OQU78428	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038733_P001	Maize	mitochondrion	83.89	83.63
TraesCS1D01G357400.1	Wheat	mitochondrion	70.18	73.27
TraesCS1B01G369200.1	Wheat	mitochondrion	70.63	72.94
HORVU1Hr1G080900.3	Barley	cytosol, plastid	72.59	71.94
Os05t0534000-01	Rice	cytosol	29.37	67.71
TraesCS1A01G352600.1	Wheat	cytosol	43.52	67.68
EES03220	Sorghum	mitochondrion, plastid	50.6	50.45
GSMUA_Achr9P05870_001	Banana	mitochondrion	45.93	47.58
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	46.54	47.03
Bra019587.1-P	Field mustard	cytosol	33.58	39.68
KRH53501	Soybean	mitochondrion	37.2	39.08
VIT_16s0098g01840.t01	Wine grape	plastid	38.1	38.74
Bra017999.1-P	Field mustard	cytosol	32.83	38.65
CDY00193	Canola	plastid	33.73	38.55
CDX86985	Canola	mitochondrion	33.73	38.03
KRH64444	Soybean	mitochondrion	35.84	37.72
CDY08118	Canola	plastid	33.43	37.25
CDX83077	Canola	mitochondrion, plastid	34.64	36.62
PGSC0003DMT400023464	Potato	plastid	35.69	36.35
AT3G49240.1	Thale cress	cytosol, plastid	34.19	36.09
Bra029944.1-P	Field mustard	mitochondrion, plastid	34.04	34.98
CDX68524	Canola	cytosol, mitochondrion, plastid	32.83	34.71
CDY05914	Canola	cytosol	7.53	33.11
Solyc03g083280.2.1	Tomato	nucleus	24.55	32.09
CDY05913	Canola	cytosol	15.81	21.56
OQU93028	Sorghum	mitochondrion	19.58	14.86
OQU78362	Sorghum	cytosol	14.31	13.87

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8061054	UniProt:C5YUG8	ncoils:Coil	EnsemblPlants:EES19865
ProteinID:EES19865	ProteinID:EES19865.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1616	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3009G210100
SUPFAM:SSF48452	SUPFAM:SSF81901	unigene:Sbi.5391	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A89168
RefSeq:XP_002441435.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:55650617..55653051

Molecular Weight (calculated)

72087.7 Da

IEP (calculated)

4.802

GRAVY (calculated)

-0.216

Length

664 amino acids

Sequence
(BLAST)

001: MSLSKPVSAR RLVPALFPLA HADVASAAAS RCERRKDTFV ATPPTPAPSP RAVRLAEPLP TLAPSRLAFH NRILALLSGP QADLPEAALL TRHALHSNCR
101: PSSFTCAAVL AALLRARRLE DFFALHRFAL QAAVPPTAAT HVLYLSALAA RRLADDALHH LRLLARPGSP VPPSPTAYRV VVECLVADHG RLADAVELKD
201: EMLDSGFVGP DPKVYRTLMA GFLGAGDGAK AVELYQELKD KVGGEPVLDG IVYGTLMKAY FLMGMEEKAM ECYKEVLSVE SAVRFGADSY NEVVDALGQN
301: GRLEDALKLF HRMLGEHDPP LRIAVDLRSF RVMVDAYCAA GRFEDAIAVF RRMGEWKLVP DVASYNNLIR HLQNNQLIDK VEELYSEMCE SGVGADEETY
401: LLLMEACFSV DRIDDGISYF DKMDELELKP DATAYHKLVD GLVGFSMVDK AQEYFDQMKE KGVSPSISSY ETLLKAYIAA DRLDDAVKVA KGILLDEKVV
501: FSDGMRELLE GALRGDGRED DIVKLYEDVE REKAEAEARA AEEKARAEAL AREERERRRA EIAAKDEAAA KASAAAIEAI LAHKRKIGNE GAPASDANTL
601: DGGFLSKLGL KSAGEGALQG NATESGDDGE VALQGNPTES GDDGEGALQD DPTERNGDNV QGHL

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.