Factsheet for Os05t0534000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0184400-01
Os06t0643800-01
Os08t0301500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	Os02t0184400-01	AT5G20280.1	21798944
AT3G49240.1	Os06t0643800-01	AT5G20280.1	21798944
AT3G49240.1	Os08t0301500-01	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G352600.1	Wheat	cytosol	65.97	44.5
CDY05914	Canola	cytosol	17.01	32.45
Os11t0433600-01	Rice	nucleus	52.08	30.8
TraesCS1D01G357400.1	Wheat	mitochondrion	65.97	29.87
TraesCS1B01G369200.1	Wheat	mitochondrion	65.62	29.39
EES19865	Sorghum	mitochondrion	67.71	29.37
HORVU1Hr1G080900.3	Barley	cytosol, plastid	66.67	28.66
Zm00001d038733_P001	Maize	mitochondrion	65.28	28.23
GSMUA_Achr9P05870_001	Banana	mitochondrion	42.01	18.88
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	42.01	18.42
Solyc03g083280.2.1	Tomato	nucleus	28.82	16.34
VIT_16s0098g01840.t01	Wine grape	plastid	32.29	14.24
Bra019587.1-P	Field mustard	cytosol	27.43	14.06
KRH53501	Soybean	mitochondrion	30.56	13.92
CDX86985	Canola	mitochondrion	27.43	13.41
KRH64444	Soybean	mitochondrion	29.17	13.31
Bra017999.1-P	Field mustard	cytosol	26.04	13.3
CDX83077	Canola	mitochondrion, plastid	28.82	13.22
AT3G49240.1	Thale cress	cytosol, plastid	28.82	13.2
PGSC0003DMT400023464	Potato	plastid	29.51	13.04
CDY08118	Canola	plastid	26.39	12.75
Bra029944.1-P	Field mustard	mitochondrion, plastid	28.47	12.69
CDX68524	Canola	cytosol, mitochondrion, plastid	27.43	12.58
CDY00193	Canola	plastid	25.35	12.56
Os05t0365500-01	Rice	nucleus	22.57	7.14
CDY05913	Canola	cytosol	1.74	1.03

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0P0WQF2	ProteinID:BAS95060.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os05g0534000	EnsemblPlants:Os05t0534000-01	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1616	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000393A2B6	SEG:seg	:	:	:	:

Description

Hypothetical conserved gene. (Os05t0534000-01)

Coordinates

chr5:-:26504419..26505571

Molecular Weight (calculated)

31378.8 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.432

Length

288 amino acids

Sequence
(BLAST)

001: ISWFRRMGEW EVVADVAAYN NLIRHLSLQG LVSEAELLYK EMGESGLKAD EETYVLLMQG CFRVDRIDEG INYFDGMAEL GLKPDATAYH KIVDGLIGFG
101: MLDNAHGYLD KMRGKEISPS IASYEALLKA YIGEASLDKS IDIAKDILLD EKVVFSDEMR DLLEGALREA GREGDITKLY EDVEEKKAEA AARAEEEKAR
201: AEALAREERE KRRAEAAAKD EAAARASAAA IEAILGHKRK TENVTGEPAP DANSLDGVFQ SRFGITSAGD GALQGTSSGG ETKQGDGH

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.