Factsheet for PGSC0003DMT400023464

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	PGSC0003DMT400071807	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083280.2.1	Tomato	nucleus	75.61	97.05
VIT_16s0098g01840.t01	Wine grape	plastid	64.11	64.01
KRH64444	Soybean	mitochondrion	59.05	61.01
Bra019587.1-P	Field mustard	cytosol	51.53	59.79
Bra017999.1-P	Field mustard	cytosol	51.53	59.57
CDY00193	Canola	plastid	52.61	59.04
HORVU3Hr1G052300.1	Barley	plastid	12.12	58.96
KRH53501	Soybean	mitochondrion	56.44	58.23
CDX86985	Canola	mitochondrion	52.3	57.89
CDX68524	Canola	cytosol, mitochondrion, plastid	55.37	57.48
CDY08118	Canola	plastid	52.15	57.05
Bra029944.1-P	Field mustard	mitochondrion, plastid	55.37	55.88
CDX83077	Canola	mitochondrion, plastid	53.22	55.25
AT3G49240.1	Thale cress	cytosol, plastid	52.76	54.69
EES03220	Sorghum	mitochondrion, plastid	49.39	48.35
CDY05914	Canola	cytosol	11.2	48.34
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	48.62	48.25
Zm00001d044388_P001	Maize	plastid	40.34	47.47
GSMUA_Achr9P05870_001	Banana	mitochondrion	46.32	47.11
HORVU3Hr1G052280.1	Barley	cytosol, plastid	47.55	46.76
TraesCS3D01G216600.1	Wheat	cytosol	47.39	46.61
TraesCS3A01G214000.1	Wheat	cytosol	47.09	46.3
Os11t0433600-01	Rice	nucleus	33.74	45.17
TraesCS3B01G244700.1	Wheat	cytosol	46.32	44.87
TraesCS1B01G369200.1	Wheat	mitochondrion	36.04	36.55
TraesCS1D01G357400.1	Wheat	mitochondrion	35.43	36.32
EES19865	Sorghum	mitochondrion	36.35	35.69
CDY05913	Canola	cytosol	26.53	35.52
HORVU1Hr1G080900.3	Barley	cytosol, plastid	36.2	35.22
TraesCS1A01G352600.1	Wheat	cytosol	22.55	34.43
Zm00001d038733_P001	Maize	mitochondrion	34.82	34.08
Os05t0534000-01	Rice	cytosol	13.04	29.51
PGSC0003DMT400064089	Potato	mitochondrion, plastid	24.08	15.15

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102602840	MapMan:35.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006349	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009960	GO:GO:0009987	GO:GO:0040029	InterPro:IPR002885	InterPro:IPR011990
UniProt:M1AIE7	PFAM:PF01535	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400009084	PGSC:PGSC0003DMG400009084	EnsemblPlants:PGSC0003DMT400023464
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002954DDD	RefSeq:XP_006350543.2	SEG:seg	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009084]

Coordinates

chr3:-:48357798..48360197

Molecular Weight (calculated)

73365.4 Da

IEP (calculated)

5.261

GRAVY (calculated)

-0.503

Length

652 amino acids

Sequence
(BLAST)

001: MALSKHTFFT HHLRTLAKPQ YLRRPQPPPS FISLRLLSFA TPEEAAAERR KRKRRLRIEP PLSSLRQQHQ PRPTAPQNPS STNNPNAPKI PETVSVLSGN
101: RLNLHNRILK LIRENDLDEA ALYTRHSVYS NCRPTIFTCN AVMAAQLRQS RYSDLLSLHR FITQAGIGAN IVTHNLLLTA FMDCRKTDMA MEHYKQLINN
201: APFNPSPTTY RILMKGLVDN NKIDRAMELK EEMLSKGFCA DPIVYSYLMS GQAKGSNPDA VFELYEELKE KLGGSVSDGV IYGSLMKGYF LRGMEQEAME
301: CYEEAVGENS KIKMSAVAFN YILDALSKNG KFDEALKLFD RMLNEHDPPK RLTVNLGSYN VMVDGYCALG RFKDAINVFN SMGEKRCRPD TLSYNNLIEQ
401: LCKNDLLGEA EELYKDMGEK GVSPDEFTFV LLMDTCFKES RPDDAAAYFK TMVDSKLRPN LGVYDRLVDG LVKVGKVDEA KSFFDLMMGK LRMNDDSYKF
501: MMNALFDIGQ HDEVLKIVDR MLREDPADFS DELQEFVREA LAKEGRDEEL TKLMDDIERE KKEAADREVE AAEKAKASAR AAVSSLINSP KLFGNKEPEE
601: QSTIAGEAAS INDDDKQEEV SVQETAAEAS STGEGAEAEN LVATEARSDG AL

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.