Factsheet for TraesCS3D01G216600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G015500.1
TraesCS3D01G013000.1
TraesCS6A01G144800.1
TraesCS6B01G173000.2
TraesCS6D01G133800.1
TraesCS7A01G518200.1
TraesCS7B01G434300.1
TraesCS7D01G508100.1
TraesCSU01G044500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	TraesCS3A01G015500.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS3D01G013000.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6A01G144800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6B01G173000.2	AT5G20280.1	21798944
AT3G49240.1	TraesCS6D01G133800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7A01G518200.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7B01G434300.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7D01G508100.1	AT5G20280.1	21798944
AT3G49240.1	TraesCSU01G044500.2	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G214000.1	Wheat	cytosol	97.89	97.89
HORVU3Hr1G052280.1	Barley	cytosol, plastid	95.32	95.32
TraesCS3B01G244700.1	Wheat	cytosol	93.97	92.57
Os11t0433600-01	Rice	nucleus	60.18	81.93
HORVU3Hr1G052300.1	Barley	plastid	16.14	79.85
EES03220	Sorghum	mitochondrion, plastid	78.88	78.53
Zm00001d044388_P001	Maize	plastid	64.56	77.26
GSMUA_Achr9P05870_001	Banana	mitochondrion	58.82	60.84
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	59.13	59.67
VIT_16s0098g01840.t01	Wine grape	plastid	48.87	49.62
TraesCS1D01G357400.1	Wheat	mitochondrion	47.36	49.37
KRH53501	Soybean	mitochondrion	46.91	49.21
KRH64444	Soybean	mitochondrion	45.85	48.18
PGSC0003DMT400023464	Potato	plastid	46.61	47.39
Bra019587.1-P	Field mustard	cytosol	39.97	47.15
CDY00193	Canola	plastid	40.72	46.47
Bra017999.1-P	Field mustard	cytosol	38.91	45.74
CDX86985	Canola	mitochondrion	39.67	44.65
AT3G49240.1	Thale cress	cytosol, plastid	42.23	44.52
CDY08118	Canola	plastid	39.82	44.3
CDX83077	Canola	mitochondrion, plastid	41.78	44.11
Solyc03g083280.2.1	Tomato	nucleus	33.79	44.09
Bra029944.1-P	Field mustard	mitochondrion, plastid	42.53	43.65
CDX68524	Canola	cytosol, mitochondrion, plastid	41.33	43.63
CDY05914	Canola	cytosol	7.69	33.77
CDY05913	Canola	cytosol	21.72	29.57
TraesCS2D01G527300.1	Wheat	mitochondrion	26.09	20.26
TraesCS2D01G061700.1	Wheat	golgi	26.09	18.21

Protein Annotations

EnsemblPlants:TraesCS3D01G216600.1	EnsemblPlantsGene:TraesCS3D01G216600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF237	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
SEG:seg	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr3D:-:293811066..293813057

Molecular Weight (calculated)

73223.3 Da

IEP (calculated)

4.993

GRAVY (calculated)

-0.360

Length

663 amino acids

Sequence
(BLAST)

001: MALSKPLFSR LLPFSLRLPV RPQHRLLCLA TPTDLPDAPT DASAERRRRK RRLRVEPPSS RGPTPQRTPG GPRPSSNPNA LKLPEPASVL SGKRLDLHRR
101: ILTLVRENDL DEAALLTRHS IYSNCRPTVF TCNTVLAALL RQARYADLLS LHRFVTQASV APTVATHNLL LQAYCDCRRP ETALEHFRLL LKDDSPVLPS
201: PTTYRILARS LAENGKLDLA LELKDGMLER GLIAPDPQVY AFVMGGFVNA GDGDTAVSLY EELKEKLGGG LILDGVVYGN LMKGYFLKGM EKEAMDCYTE
301: VLGEGSKVRF EAVSYNMVLD ALGRNGRLDD AVELFDRMCK EHDPPRRIAV NLGSFNVMVD AYCRVERFQD AIEVFGKMGD KSCTPDALSY NSLIDWLGKN
401: ELVGEAEGLY KEMGERGINP DEYTYVLLIE SCFRVDNVDD AVCYFNKMFD VGLRPNANAF NKVISGLVKV DRIDEAQGFF DLMPEKEVKP NIASYESLLR
501: AYINVARLDD AIKMAKGILL DESIVFTDEL KALLDGALQK EGRNGDMTKL YEDVETEKAE AAARAAEEKA RAEALAKEEE EKKKAEAKTK EESAARASRA
601: AIDAVLGRKS GAENGESSQE MSVEEAQVVE SHSDAVGAAE QNEGDDQKKE SVDATSQVIA SSS

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.