Factsheet for TraesCS2D01G061700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G160900.1
TraesCS5B01G158300.1
TraesCS5D01G165800.2
TraesCS7A01G519700.1
TraesCS7B01G435800.1
TraesCS7D01G509400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	TraesCS5A01G160900.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS5B01G158300.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS5D01G165800.2	AT2G15400.1	16489121
AT1G10270.1	TraesCS7A01G519700.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS7B01G435800.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS7D01G509400.1	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G063500.1	Wheat	mitochondrion	89.58	90.63
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	90.95	85.21
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	72.21	78.49
HORVU2Hr1G011400.1	Barley	cytosol	66.11	78.4
TraesCS2D01G527300.1	Wheat	mitochondrion	60.84	67.68
Os05t0365500-01	Rice	nucleus	61.79	64.43
Zm00001d032900_P001	Maize	mitochondrion	49.47	57.81
OQU78362	Sorghum	cytosol	40.63	56.35
OQU93028	Sorghum	mitochondrion	50.63	54.97
GSMUA_Achr10P...	Banana	mitochondrion, plastid	35.16	54.05
VIT_12s0035g01700.t01	Wine grape	mitochondrion	31.05	47.05
KRH26275	Soybean	mitochondrion	32.42	38.89
CDY31037	Canola	mitochondrion	31.47	37.05
Bra018451.1-P	Field mustard	mitochondrion	31.47	37.05
KRH06034	Soybean	mitochondrion	33.68	36.99
CDY25066	Canola	cytosol	4.95	36.43
CDY20645	Canola	mitochondrion	30.95	35.81
CDX93444	Canola	mitochondrion	28.32	35.35
CDY34898	Canola	mitochondrion	31.16	34.66
Bra031706.1-P	Field mustard	mitochondrion	30.95	34.43
Bra019952.1-P	Field mustard	mitochondrion	29.37	34.07
CDX94912	Canola	mitochondrion	29.05	33.33
CDY21873	Canola	cytosol	3.79	33.33
Solyc01g103160.2.1	Tomato	nucleus	33.16	32.34
AT1G10270.1	Thale cress	mitochondrion	30.74	31.98
CDY09648	Canola	extracellular, mitochondrion, plastid	12.63	31.83
CDY65945	Canola	cytosol	22.32	31.22
PGSC0003DMT400064089	Potato	mitochondrion, plastid	33.05	30.31
CDY53878	Canola	mitochondrion	4.42	29.17
TraesCS3D01G216600.1	Wheat	cytosol	18.21	26.09
TraesCS1D01G357400.1	Wheat	mitochondrion	15.58	23.27
AT3G60960.1	Thale cress	mitochondrion	8.74	20.6
CDY25062	Canola	mitochondrion	7.79	20.39
CDY33104	Canola	mitochondrion	7.79	20.11
CDX95653	Canola	mitochondrion	8.32	19.7
AT3G60980.1	Thale cress	mitochondrion	8.21	18.93
CDY37773	Canola	mitochondrion	8.42	18.82
CDX80067	Canola	mitochondrion	8.32	18.16
Bra004488.1-P	Field mustard	cytosol	7.79	18.0
CDY10671	Canola	mitochondrion	7.47	17.79
CDX95410	Canola	cytosol	0.95	17.31
AT5G28380.1	Thale cress	cytosol	7.05	17.18
AT5G28340.1	Thale cress	cytosol	7.37	16.09
Bra000388.1-P	Field mustard	cytosol	5.16	15.81
CDX71714	Canola	cytosol	3.68	14.4
Bra004487.1-P	Field mustard	mitochondrion	7.68	13.8
CDX80068	Canola	mitochondrion	7.68	13.8
CDY37774	Canola	mitochondrion	7.16	12.36
CDY53879	Canola	cytosol	0.95	5.0

Protein Annotations

EnsemblPlants:TraesCS2D01G061700.1	EnsemblPlantsGene:TraesCS2D01G061700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2D:-:25351885..25354737

Molecular Weight (calculated)

104697.0 Da

IEP (calculated)

8.365

GRAVY (calculated)

-0.711

Length

950 amino acids

Sequence
(BLAST)

001: MAALLRRLLL LRRLLLLRRL PVPHPQPRLL PPTTTPTPHP ALSPALLAPA RGFSFSSAEE AAAERRRRKR RLRIEPPLHA LRRDPSAPPP PRDPNAPRLP
101: DTTSSLVGPR LSLHNRVQSL IRSGDLDGAS AAARAAVSSR VRPTVFTCNA VAASMGRAGR HDDAVALFDF FFRRSGIVPN VVSYNTLILA HCEAGRVDEA
201: LLAYQEMLDG ATSFSPSAVS YRHLTKGLVA AGRIQEALEL HHSMYHRGQG ADSIVYKNLI DGYIGLDDWD KAFELFAELT EKATVYDGVV HTSFMEGYWK
301: KGMDKEAMEN YKSLLDRKFK MTPATCNVLL ETLFKHDKHK EANDLWETMI DNHSPPSFIG MNSESYNVMV NQCFKEGRFQ DAIEVFHRQP RRNVQMDVGC
401: FNNIIGKLCE QGMLAEAEKL FEEMESKSVL PDVYTYTFLV DLCFKEGRVD DTIQYFYKMA DGREHGPKFN IGFFNRMFEG LSQAGRVDDA LKVYGRMADK
501: EIKPNTTTFE ILVNALCKEG ELDRALDLVR DMARGGVVAT PEFRESVSEI FKNADRHEEI EKAFEEKPVP LPPQPRPEVR PRTSPQGLPG FASNQTRGSY
601: TPNQGQPGYG SPQPFQPGNG ASQVRQPEWM SPKLQQPVSG NQQVEKTDVG ASNKWQHGIS SPQEKQPGIA LPQDGQQPEF GTSRPWQQTV GAPQVQQPNF
701: GSATPVQPGF GSRPQQPTHV AHETQHPGFG TSRPWQTGYG AHQAQQPGHG AQQAQQPGYG AHQAQQPGYG AHQAQQPGYG AHQAQQPGYG AHQAQQAGYG
801: AHQAQQPGYG AQQAQQPRYG ANQAQQPGYG AHQAQQPGYG AHQAQQPRYG AHQAQQPGYG VHQAQQPGYG THQVQQPGYG APQASRPSFG APEAQRSSLG
901: SAQSLPHYGR IGNEHDQLGS SRQGGPTFST QAPQTAEAPD DMAVKYSQHY

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.