CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95410	Canola	cytosol	10.53	80.77
CDY37773	Canola	mitochondrion	66.17	62.12
CDX80067	Canola	mitochondrion	64.91	59.54
CDY25066	Canola	cytosol	14.29	44.19
CDY53879	Canola	cytosol	14.29	31.67
CDX95653	Canola	mitochondrion	26.57	26.43
CDY53878	Canola	mitochondrion	9.27	25.69
CDY25062	Canola	mitochondrion	22.56	24.79
CDY33104	Canola	mitochondrion	22.81	24.73
CDX71714	Canola	cytosol	11.78	19.34
CDX80068	Canola	mitochondrion	25.31	19.09
CDY37774	Canola	mitochondrion	23.81	17.27
CDY09648	Canola	extracellular, mitochondrion, plastid	15.79	16.71
GSMUA_Achr10P...	Banana	mitochondrion, plastid	18.05	11.65
CDY21873	Canola	cytosol	3.01	11.11
CDX93444	Canola	mitochondrion	18.55	9.72
CDX94912	Canola	mitochondrion	19.05	9.18
CDY31037	Canola	mitochondrion	18.3	9.05
CDY34898	Canola	mitochondrion	19.3	9.02
Zm00001d032900_P001	Maize	mitochondrion	18.3	8.98
CDY20645	Canola	mitochondrion	18.05	8.77
TraesCS2A01G524300.1	Wheat	mitochondrion	18.05	8.71
OQU93028	Sorghum	mitochondrion	18.55	8.46
TraesCS2D01G527300.1	Wheat	mitochondrion	17.79	8.31
Os05t0365500-01	Rice	nucleus	18.3	8.01
CDY65945	Canola	cytosol	13.53	7.95
TraesCS2A01G063500.1	Wheat	mitochondrion	17.79	7.56
TraesCS2D01G061700.1	Wheat	golgi	17.79	7.47
OQU78362	Sorghum	cytosol	12.28	7.15
TraesCS2B01G554300.1	Wheat	nucleus	18.05	7.14
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	17.54	6.9
CDY08118	Canola	plastid	8.02	5.37
CDY00193	Canola	plastid	7.52	5.16
CDX68524	Canola	cytosol, mitochondrion, plastid	7.77	4.94
CDX86985	Canola	mitochondrion	7.27	4.92
HORVU2Hr1G011400.1	Barley	cytosol	9.52	4.74
CDX83077	Canola	mitochondrion, plastid	7.27	4.62
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	9.27	4.23
CDY05913	Canola	cytosol	3.76	3.08
CDY05914	Canola	cytosol	1.0	2.65

Protein Annotations

EnsemblPlants:CDY10671	EnsemblPlantsGene:GSBRNA2T00048433001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY10671	ProteinID:CDY10671.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE112D	UniProt:A0A078FBC1	MapMan:35.1	:	:

Description

BnaA05g16910DBnaA05g16910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBC1]

Coordinates

chrLK032005:+:506141..507409

Molecular Weight (calculated)

45822.5 Da

IEP (calculated)

7.607

GRAVY (calculated)

-0.142

Length

399 amino acids

Sequence
(BLAST)

001: MFLGRCINLM VGLSKSLLSL SNRRNMSTTY VAAATLARYP LGKDLSWIPT IRDLNPAALS MGRPVSLLYR VLTMIELSNV DGAVELVRLY VSKDDRPRHD
101: TILICNAVIG AMCQAKRFRD GIILFHYFFN ENNIVPNIVS FNHVIKAFCE LGRVDDTLQL YRHAVPFGPD KETFRLLTQA LADAYGYREA SCVRLCICST
201: NEWSPMLVEL RARLDQMDAE DADDYFHKNR LIYDDDSDSP RVFGSIATIF VEYWFKHGNE KKAMECYSSI RTWVSVKLEA HTLFEFMLKK PKRFDSDTIN
301: IMVDYWFETF NESQQQGRKR MVGCYSNMIA RLCDRGMMSE AEGLFEDMCS DIDLCPPPDV STFRSMVNGY VRSGRVKDAI KISNKLAILK LRKVSIYED

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.