CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95653	Canola	mitochondrion	90.97	32.67
CDY25066	Canola	cytosol	22.92	25.58
CDY09648	Canola	extracellular, mitochondrion, plastid	25.0	9.55
CDY25062	Canola	mitochondrion	23.61	9.37
CDY10671	Canola	mitochondrion	25.69	9.27
CDY33104	Canola	mitochondrion	23.61	9.24
CDY37773	Canola	mitochondrion	27.08	9.18
CDX71714	Canola	cytosol	15.28	9.05
CDX80067	Canola	mitochondrion	26.39	8.74
CDX80068	Canola	mitochondrion	29.17	7.94
CDY37774	Canola	mitochondrion	28.47	7.45
GSMUA_Achr10P...	Banana	mitochondrion, plastid	27.78	6.47
CDX95410	Canola	cytosol	2.08	5.77
CDY20645	Canola	mitochondrion	32.64	5.72
CDY31037	Canola	mitochondrion	31.25	5.58
CDX93444	Canola	mitochondrion	29.17	5.52
CDX94912	Canola	mitochondrion	31.25	5.43
CDY34898	Canola	mitochondrion	31.25	5.27
TraesCS2A01G524300.1	Wheat	mitochondrion	27.78	4.84
Zm00001d032900_P001	Maize	mitochondrion	27.08	4.8
TraesCS2D01G527300.1	Wheat	mitochondrion	27.08	4.57
TraesCS2A01G063500.1	Wheat	mitochondrion	29.17	4.47
TraesCS2D01G061700.1	Wheat	golgi	29.17	4.42
Os05t0365500-01	Rice	nucleus	27.78	4.39
OQU93028	Sorghum	mitochondrion	26.39	4.34
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	29.17	4.14
TraesCS2B01G554300.1	Wheat	nucleus	27.78	3.97
CDY08118	Canola	plastid	15.97	3.86
CDY00193	Canola	plastid	15.28	3.79
CDX86985	Canola	mitochondrion	15.28	3.74
CDX83077	Canola	mitochondrion, plastid	15.97	3.66
CDX68524	Canola	cytosol, mitochondrion, plastid	15.97	3.66
CDY65945	Canola	cytosol	15.28	3.24
CDY53879	Canola	cytosol	3.47	2.78
OQU78362	Sorghum	cytosol	11.11	2.34
CDY05913	Canola	cytosol	6.94	2.05
HORVU2Hr1G011400.1	Barley	cytosol	9.03	1.62
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	9.03	1.49
CDY05914	Canola	cytosol	0.69	0.66
CDY21873	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY53878	EnsemblPlantsGene:GSBRNA2T00011637001	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393	ProteinID:CDY53878	ProteinID:CDY53878.1
UniParc:UPI0004EDD481	UniProt:A0A078IXZ2	MapMan:35.1	:	:	:

Description

BnaA03g56800DBnaA03g56800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXZ2]

Coordinates

chrLK033247:+:963..1397

Molecular Weight (calculated)

16490.0 Da

IEP (calculated)

9.601

GRAVY (calculated)

-0.051

Length

144 amino acids

Sequence
(BLAST)

001: MFFNRLFAVP IHHHRRFVNT ASLSYVKRLS SIHNRVMMLI KLSNLDAAAE QARLAVFSRG DPYLTAETGV AIIDAMRSDR RYSDAYDLFH YYAANSKWDL
101: ITNRCSGPII IALCDEGKLD EALELYKHIL LRARPSYRAQ LALA

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.