Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49240.1 | CDX92473 | AT5G20280.1 | 21798944 |
| AT3G49240.1 | CDY35815 | AT5G20280.1 | 21798944 |
| AT3G49240.1 | CDY45096 | AT5G20280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08118 | Canola | plastid | 50.31 | 41.11 |
| CDY00193 | Canola | plastid | 42.71 | 35.8 |
| CDX83077 | Canola | mitochondrion, plastid | 45.38 | 35.19 |
| CDX68524 | Canola | cytosol, mitochondrion, plastid | 44.97 | 34.87 |
| CDX86985 | Canola | mitochondrion | 41.27 | 34.13 |
| AT3G49240.1 | Thale cress | cytosol, plastid | 43.74 | 33.86 |
| HORVU3Hr1G052300.1 | Barley | plastid | 8.42 | 30.6 |
| KRH53501 | Soybean | mitochondrion | 36.14 | 27.85 |
| KRH64444 | Soybean | mitochondrion | 35.93 | 27.73 |
| PGSC0003DMT400023464 | Potato | plastid | 35.52 | 26.53 |
| Zm00001d044388_P001 | Maize | plastid | 28.95 | 25.45 |
| VIT_16s0098g01840.t01 | Wine grape | plastid | 34.09 | 25.42 |
| HORVU3Hr1G052280.1 | Barley | cytosol, plastid | 29.98 | 22.02 |
| TraesCS3A01G214000.1 | Wheat | cytosol | 29.57 | 21.72 |
| TraesCS3D01G216600.1 | Wheat | cytosol | 29.57 | 21.72 |
| EES03220 | Sorghum | mitochondrion, plastid | 29.57 | 21.62 |
| GSMUA_Achr6P26580_001 | Banana | mitochondrion, plastid | 29.16 | 21.61 |
| GSMUA_Achr9P05870_001 | Banana | mitochondrion | 28.34 | 21.53 |
| TraesCS3B01G244700.1 | Wheat | cytosol | 29.57 | 21.4 |
| Os11t0433600-01 | Rice | nucleus | 19.92 | 19.92 |
| Solyc03g083280.2.1 | Tomato | nucleus | 18.89 | 18.11 |
| TraesCS1B01G369200.1 | Wheat | mitochondrion | 21.77 | 16.49 |
| TraesCS1D01G357400.1 | Wheat | mitochondrion | 21.36 | 16.35 |
| HORVU1Hr1G080900.3 | Barley | cytosol, plastid | 21.97 | 15.97 |
| EES19865 | Sorghum | mitochondrion | 21.56 | 15.81 |
| Zm00001d038733_P001 | Maize | mitochondrion | 21.15 | 15.47 |
| TraesCS1A01G352600.1 | Wheat | cytosol | 9.65 | 11.01 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 7.8 | 10.08 |
| CDX93444 | Canola | mitochondrion | 14.78 | 9.46 |
| CDY31037 | Canola | mitochondrion | 15.61 | 9.42 |
| CDY20645 | Canola | mitochondrion | 15.81 | 9.38 |
| CDX94912 | Canola | mitochondrion | 15.4 | 9.06 |
| CDY25066 | Canola | cytosol | 2.26 | 8.53 |
| CDY34898 | Canola | mitochondrion | 14.78 | 8.43 |
| CDY21873 | Canola | cytosol | 1.85 | 8.33 |
| CDY53878 | Canola | mitochondrion | 2.05 | 6.94 |
| CDY65945 | Canola | cytosol | 8.42 | 6.04 |
| CDX95653 | Canola | mitochondrion | 3.7 | 4.49 |
| CDY25062 | Canola | mitochondrion | 3.08 | 4.13 |
| CDY33104 | Canola | mitochondrion | 3.08 | 4.08 |
| CDY37773 | Canola | mitochondrion | 3.29 | 3.76 |
| CDY10671 | Canola | mitochondrion | 3.08 | 3.76 |
| CDX80067 | Canola | mitochondrion | 3.08 | 3.45 |
| CDX80068 | Canola | mitochondrion | 3.7 | 3.4 |
| CDY37774 | Canola | mitochondrion | 3.08 | 2.73 |
| CDY05914 | Canola | cytosol | 0.82 | 2.65 |
| CDX71714 | Canola | cytosol | 1.23 | 2.47 |
| Os05t0534000-01 | Rice | cytosol | 1.03 | 1.74 |
| CDY53879 | Canola | cytosol | 0.0 | 0.0 |
| CDX95410 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EnsemblPlants:CDY05913 | ProteinID:CDY05913 | ProteinID:CDY05913.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00121719001 | InterPro:IPR002885 | InterPro:IPR011990 |
| PFAM:PF01535 | PFAM:PF12854 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF237 | InterPro:Pentatricopeptide_repeat |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EE481F | SEG:seg | : |
Description
BnaC08g20900D
Coordinates
chrLK031966:+:498252..504121
Molecular Weight (calculated)
55814.3 Da
IEP (calculated)
8.202
GRAVY (calculated)
-0.337
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQDGCSVR FWTDLWHPKG RLIDLTGEIG TQKLGIGRSA RICDVFVDGE WRFRRCRDHF LQDLVHDIRE LPLILTANVP DRVLWRDGDD TYSSKFNSKN
101: TWTNIRKKKD QVMWSRLIWF QQGVPRFAFI TWLAWGQAQY FLYCGEPDET RDHLFLIVRT RSHFGSNLLF QPPVNNLKSL LPSPCAVVFH RPALVFRDAG
201: RSRRRKRRLS LEPPLNPLNR SHQQHQQQQP QITRPILNPN IPKLPESCTQ TAAPTIFTVN TVLAAQLRQA KYGSFLQLHG FINQAGMAAN IITYNLLFQD
301: YLDVKKPELA LEHYKLFKDN APLNPSVALF RILVKGLVEE AMEIKEEMCV RGFIADPVVY SYLMIGCAKG SDGEGVFKLY EELKEKLDME EEATECYEEA
401: LGGESKVKMS AVGYNYVLGA LSENGKFDEA LNLFEVMKKE HKPPTRLALN VGSFNVMVNG YCGEGKFEEA MEVFRGMGEF RCSSPES
101: TWTNIRKKKD QVMWSRLIWF QQGVPRFAFI TWLAWGQAQY FLYCGEPDET RDHLFLIVRT RSHFGSNLLF QPPVNNLKSL LPSPCAVVFH RPALVFRDAG
201: RSRRRKRRLS LEPPLNPLNR SHQQHQQQQP QITRPILNPN IPKLPESCTQ TAAPTIFTVN TVLAAQLRQA KYGSFLQLHG FINQAGMAAN IITYNLLFQD
301: YLDVKKPELA LEHYKLFKDN APLNPSVALF RILVKGLVEE AMEIKEEMCV RGFIADPVVY SYLMIGCAKG SDGEGVFKLY EELKEKLDME EEATECYEEA
401: LGGESKVKMS AVGYNYVLGA LSENGKFDEA LNLFEVMKKE HKPPTRLALN VGSFNVMVNG YCGEGKFEEA MEVFRGMGEF RCSSPES
001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
Arabidopsis Description
EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.